Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0961
         (384 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    26   7.9  

>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 122 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP*K 235
           W T+  V +S Q+ G   +R P+R + R     + P K
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSPMK 46


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 122 WDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP*K 235
           W T+  V +S Q+ G   +R P+R + R     + P K
Sbjct: 9   WKTLTSVSKSGQKKGRRNTRQPVRPLNRFYRIGSSPMK 46


>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 134 KGVGRS*QQDGGHGSRN 184
           +G GR  Q+ GGHG RN
Sbjct: 345 RGGGRGGQRQGGHGGRN 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,387,101
Number of Sequences: 27780
Number of extensions: 185163
Number of successful extensions: 399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)