Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0961
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.23 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.23 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.53 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.5  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 187 AKECATTHLPKQPALKMDGAEAFAYTLPLPARVMLNF 297
           +K+ A     K    K+    + ++ +PLP RV+ NF
Sbjct: 199 SKKLAKAAASKAALAKLRNVHSSSFCIPLPVRVLPNF 235


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.23
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 11   NDEAGDLMTVPSGPILVSRTGA 76
            ND+  D +T P  P+ +SR G+
Sbjct: 1387 NDDGSDRLTSPPTPLSISRAGS 1408


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 0.53
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 198 CNDSPAEATSPENGW 242
           C D P E   PE+GW
Sbjct: 642 CRDIPEEFLRPESGW 656


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 351 LRSPSRTSYSLRLNDTKLKI*HH 283
           L SP R   + R+N TKLK  HH
Sbjct: 135 LSSPPREPGTPRINFTKLKR-HH 156


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 274 VTVVYRQTLQRHPFSGLVASAGESLHTP*RIPT 176
           V V+   T+Q+  F+ L  +AGE  +    +PT
Sbjct: 577 VQVMVPPTIQQFSFTKLPMNAGEFANLQCIVPT 609


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 264 CIGKRFSAIHFQGWLL 217
           C G  F+A  F GW +
Sbjct: 285 CGGLEFTAAPFNGWYM 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,969
Number of Sequences: 438
Number of extensions: 2256
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)