Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0961
(384 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 32 0.15
At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 2.5
At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 2.5
At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / P... 27 4.3
At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / P... 27 4.3
At2g25100.1 68415.m03003 ribonuclease HII family protein contain... 27 4.3
At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2, chlorop... 27 4.3
At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase... 27 5.7
At4g21940.1 68417.m03174 calcium-dependent protein kinase, putat... 27 5.7
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote... 27 5.7
At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to hi... 26 7.5
At5g28480.1 68418.m03462 hypothetical protein 26 9.9
At5g12480.1 68418.m01466 calmodulin-domain protein kinase isofor... 26 9.9
At3g62270.1 68416.m06996 anion exchange family protein contains ... 26 9.9
At1g76040.2 68414.m08829 calcium-dependent protein kinase, putat... 26 9.9
At1g76040.1 68414.m08830 calcium-dependent protein kinase, putat... 26 9.9
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 26 9.9
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 31.9 bits (69), Expect = 0.15
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 270 VTGTCDAKFLIW-YH*AVTSRTCATESAKGSG 362
VTG+ D+ L+W H A TSRT +E + GSG
Sbjct: 2684 VTGSRDSTVLLWRIHKAFTSRTSVSEPSTGSG 2715
>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 660
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 107 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 208
P KR D+ VGRS DG +GS +P+R R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147
>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 709
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 107 PKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRL 208
P KR D+ VGRS DG +GS +P+R R+
Sbjct: 114 PVKRRRDSDGVVGRSNGPDGANGSGDPVRRPGRI 147
>At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / PAPS
reductase homolog (PRH26) identical to
5'-adenylylsulfate reductase [Arabidopsis thaliana]
GI:2738760; identical to cDNA PAPS reductase homolog
(PRH26) GI:1710113
Length = 458
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 118 LMGHHERRWSLMTAGRWPWKSESAKEC 198
L G HER GRW W+ AKEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314
>At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / PAPS
reductase homolog (PRH19) identical to
5'-adenylylsulfate reductase [Arabidopsis thaliana]
GI:2738756; identical to cDNA PAPS reductase homolog
(PRH19) GI:1710111
Length = 465
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 118 LMGHHERRWSLMTAGRWPWKSESAKEC 198
L G HER GRW W+ AKEC
Sbjct: 302 LPGQHERE------GRWWWEDAKAKEC 322
>At2g25100.1 68415.m03003 ribonuclease HII family protein contains
Pfam profile: PF01351 ribonuclease HII
Length = 296
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 103 LNTTFGSSHSASSAYQNWPTWHRHQISGF--IVRVS 2
+N FGS + + W H+H + GF +VR S
Sbjct: 188 INRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFS 223
>At1g62180.1 68414.m07014 5'-adenylylsulfate reductase 2,
chloroplast (APR2) (APSR) / adenosine 5'-phosphosulfate
5'-adenylylsulfate (APS) sulfotransferase 2 /
3'-phosphoadenosine-5'-phosphosulfate (PAPS) reductase
homolog 43 (PRH-43) identical to SP|P92981
5'-adenylylsulfate reductase 2, chloroplast precursor
(EC 1.8.4.9) (Adenosine 5'-phosphosulfate
5'-adenylylsulfate sulfotransferase 2) (APS
sulfotransferase 2) (Thioredoxin independent APS
reductase 2) (3'-phosphoadenosine-5'-phosphosulfate
reductase homolog 43) (PAPS reductase homolog 43)
(Prh-43) {Arabidopsis thaliana}; identical to cDNA PAPS
reductase homolog (PRH43) GI:1710115
Length = 454
Score = 27.1 bits (57), Expect = 4.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 118 LMGHHERRWSLMTAGRWPWKSESAKEC 198
L G HER GRW W+ AKEC
Sbjct: 294 LPGQHERE------GRWWWEDAKAKEC 314
>At5g48140.1 68418.m05946 polygalacturonase, putative / pectinase,
putative strong similarity to polygalacturonase PGA3
[Arabidopsis thaliana] GI:3152948; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 395
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -1
Query: 246 SAIHFQGWLLRQVSRCTLLSGFRLPWPPSCCHERPTPFMVSHERF 112
S IHF+ LL+ VS L+ PW C ++P+ +++ F
Sbjct: 281 SDIHFENILLKNVSNPILIDQEYCPW-NQCNKQKPSTIKLANISF 324
>At4g21940.1 68417.m03174 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase [Nicotiana tabacum] gi|3283996|gb|AAC25423
Length = 554
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 166 WPWKSESAKECATTHLPKQPALKMDGAEAFAY 261
WP SESAK+ L K P ++ A+A +
Sbjct: 326 WPSISESAKDLVRKLLTKDPKQRISAAQALEH 357
>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
kinase, putative
Length = 773
Score = 26.6 bits (56), Expect = 5.7
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = -3
Query: 307 YQIKNLASHVPVTVVYRQTLQRHPFSGLVASAGESLHTP*RIPTSMATVLLS*ATNAFHG 128
+ NL +P + VY + FSG G P IP+S ATV +T A
Sbjct: 248 FSFNNLTGSIPDSPVYLNQ-KSISFSGNPGLCGGPTRNPCPIPSSPATVSPPTSTPALAA 306
Query: 127 VP 122
+P
Sbjct: 307 IP 308
>At1g27320.1 68414.m03328 histidine kinase (AHK3) identical to
histidine kinase AHK3 [Arabidopsis thaliana]
gi|13537198|dbj|BAB40775
Length = 1036
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 307 IIKP*RVGRARRRAQKGLGVNSLEPP 384
I+KP R Q+GLG+ EPP
Sbjct: 848 IVKPLRASMLAATLQRGLGIGIREPP 873
>At5g28480.1 68418.m03462 hypothetical protein
Length = 1230
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 176 SRNPLRSVQRLTCRSNQP*KWMALKRLPIHYRYRHV*C 289
S P + V R + R N K A LP+ R +HV C
Sbjct: 574 STKPRKFVPRRSSRLNNTPKKAATGSLPVEVRLQHVPC 611
>At5g12480.1 68418.m01466 calmodulin-domain protein kinase isoform 7
(CPK7) identical to calmodulin-domain protein kinase
CDPK isoform 7 [Arabidopsis thaliana]
gi|1399277|gb|AAB03247
Length = 535
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 166 WPWKSESAKECATTHLPKQPALKMDGAEAFAYTLPLPARVMLNF*FG 306
WP S+SAK+ L P ++ A+ +T L A+ N G
Sbjct: 283 WPRVSDSAKDLVRKMLEPDPKKRLTAAQVLEHTWILNAKKAPNVSLG 329
>At3g62270.1 68416.m06996 anion exchange family protein contains
similarity to anion exchanger 3, cardiac splice form -
Rattus norvegicus, PIR:A42497
Length = 703
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 137 LSWCPMSVF*AP*HYVWFIPQRQFCLPKLAHLAPSSDL 24
L+W P++ P ++ IP RQ+ LP+ A DL
Sbjct: 560 LTWIPIAGVMFPLLIMFLIPVRQYILPRFFKSAHLQDL 597
>At1g76040.2 68414.m08829 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase GB:AAC25423 GI:3283996 [Nicotiana tabacum]
Length = 534
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 166 WPWKSESAKECATTHLPKQPALKMDGAEAFAY 261
WP SESAK+ L + P ++ AEA +
Sbjct: 309 WPTISESAKDLIRKMLIRDPKKRITAAEALEH 340
>At1g76040.1 68414.m08830 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase GB:AAC25423 GI:3283996 [Nicotiana tabacum]
Length = 323
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 166 WPWKSESAKECATTHLPKQPALKMDGAEAFAY 261
WP SESAK+ L + P ++ AEA +
Sbjct: 98 WPTISESAKDLIRKMLIRDPKKRITAAEALEH 129
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 25.8 bits (54), Expect = 9.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 111 LGALTLRLVHPTAPVLLTKIGPLGTVIRSPASS 13
LG+ T R V+ + +LL + GTVIRS S+
Sbjct: 881 LGSRTERPVNVSLDMLLKLVAVFGTVIRSTVSA 913
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,078,835
Number of Sequences: 28952
Number of extensions: 180793
Number of successful extensions: 438
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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