Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0956
         (761 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.7  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   2.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.1  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/52 (19%), Positives = 25/52 (48%)
 Frame = +2

Query: 20  LMWYIPTHFSSKYFLCDDISVRVLNAARIWTRTEKRKHLCKYSVCSWIFASR 175
           L +++  H  SK F C+      +N + + +  +   ++ +YS     +A++
Sbjct: 246 LEYHLRNHAGSKPFQCNKCDYTCVNKSMLNSHMKSHSNVYRYSCRDCSYATK 297


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/52 (19%), Positives = 25/52 (48%)
 Frame = +2

Query: 20  LMWYIPTHFSSKYFLCDDISVRVLNAARIWTRTEKRKHLCKYSVCSWIFASR 175
           L +++  H  SK F C+      +N + + +  +   ++ +YS     +A++
Sbjct: 4   LEYHLRNHAGSKPFQCNKCDYTCVNKSMLNSHMKSHSNVYRYSCRDCSYATK 55


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 105 IRAAFNTRTEISSHKKYFELKCVGMYHIK 19
           I   F++ T  +   KY E+KC  +Y+ K
Sbjct: 767 IPTGFDSCTVCTCDAKYLEIKCKRIYNEK 795


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 201 PTV*SHVSHHLISLIAPFE 257
           PT  SHV HH  SL+   E
Sbjct: 128 PTDNSHVHHHQTSLLGKVE 146


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 545 VNENIYGSISRSVQ 586
           + ENIYG  +R+VQ
Sbjct: 24  LTENIYGGSTRTVQ 37


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 545 VNENIYGSISRSVQ 586
           + ENIYG  +R+VQ
Sbjct: 24  LTENIYGGSTRTVQ 37


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 545 VNENIYGSISRSVQ 586
           + ENIYG  +R+VQ
Sbjct: 24  LTENIYGGSTRTVQ 37


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 545 VNENIYGSISRSVQ 586
           + ENIYG  +R+VQ
Sbjct: 24  LTENIYGGSTRTVQ 37


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 175 CEMKTFTIYLRFSLTYLII*FH*LRRLNTEYF 270
           C    FT++L F   ++    H L  L  +YF
Sbjct: 171 CAFIIFTMHLLFCCAFIFFNMHLLFLLCLDYF 202


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,424
Number of Sequences: 336
Number of extensions: 3053
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)