Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0956
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    27   2.9  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   3.9  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    26   5.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.9  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   8.9  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     25   8.9  

>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 691 HRNEIRKNTTRTPVRMTS 744
           H +++ KNTT TP++ TS
Sbjct: 381 HESKLMKNTTETPIKRTS 398


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = -1

Query: 626 CSRREVELSNCFVFELNAILSRKYFRSLVK--PQKLNDFFKQSEFLRSGCYLTKN 468
           C R E  L++C +   N     ++F       P K  D F  + F+R G +L  N
Sbjct: 134 CGRDE-NLTSCIIEHCNVYSEAEFFSKFPAGIPTKRKDLFPCNFFIRRGVHLKVN 187


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 686 HLTGHSA-FSAHRRSRTPLDCCSRREVELSNCFVFELNAILSR 561
           ++ GH+  F  + R R  LD    R  E +NCF F   A+ SR
Sbjct: 138 NVCGHNQRFPRYNRIRALLDSRKGRCGEWANCFTFLCRALGSR 180


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 33  YLHILVRNIFYAMIFLCEY*MRRGSGLELKSENI 134
           Y H+ +R++  A IF C + + + SG+ L  + +
Sbjct: 660 YSHLELRSLLLARIFQCFFELSQLSGMSLDDQEL 693


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 36  LHILVRNIFYAMIFLCEY*MRRGSGLELKSENIYVNIPYVL 158
           L+I+    F A  FL +Y  +RG  + + S+N+Y    Y +
Sbjct: 542 LYIMNPKKFQACQFLIDYHEKRGDKIIVFSDNVYALRAYAI 582


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = +1

Query: 427 NQLIIEKKIKYISVFLVR*QPLRKNSDCLKKSFNF*GLTSERKYLRLNI 573
           + ++I+K  K++     R  P+R     ++  FN+  ++S +K+ R+ +
Sbjct: 68  DHVLIQKARKHLEFVSSRIGPVRNPGSIVEDQFNYYPISSIKKFSRIPV 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,698
Number of Sequences: 5004
Number of extensions: 50687
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)