Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0956
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44791| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   2.4  
SB_9148| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)                 29   4.1  
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)               29   5.5  
SB_8029| Best HMM Match : Mucin (HMM E-Value=8.6)                      29   5.5  
SB_25850| Best HMM Match : XylR_N (HMM E-Value=9.8)                    28   9.5  
SB_3910| Best HMM Match : XylR_N (HMM E-Value=9.8)                     28   9.5  

>SB_44791| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 415

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 758 HYNICDVILTGVLVVFFLISFLCVHLTGHSAFSAHRRSRT 639
           HY++  +I     V+F LI  +C +L    A  ++RR RT
Sbjct: 20  HYDLVSIIAQASFVIFILILDVCGNLLVCGAILSYRRLRT 59


>SB_9148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 746 CDVILTGVLVVFFLISFLCVHLTGHSAFSAHRRSR-TPLDCCSRREVE 606
           C V++ G+ V+   + +LC+ L G +  S +RR+R T L    R+  E
Sbjct: 48  CKVLIVGMSVI---MEYLCLRLLGFNIVSVYRRARITALTIIGRKPEE 92


>SB_25129| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-24)
          Length = 540

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -1

Query: 617 REVELSNCFVFELNAILSRKYFRSLVKPQKLNDFFKQSEFLRSGCYLTKNTEI 459
           R VEL   F   L + L   Y R   +P  +NDF ++SE    GC    N+ +
Sbjct: 283 RNVELKRTFWKVLESCLCGLYKRD--RPGSINDFHRRSEVHMPGCPRKMNSTL 333


>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
          Length = 201

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 83  RVLNAARIWTRTEKRKHLCKY 145
           R +NA  +W+RTE+RK   KY
Sbjct: 11  RPMNAFMVWSRTERRKLALKY 31


>SB_8029| Best HMM Match : Mucin (HMM E-Value=8.6)
          Length = 325

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 671 SAFSAHRRSRTPLDCCSRREVELSNCFVFELNAILSRKYFRS 546
           S F   R  R P+ C    +  L++C V ++   LS K+F S
Sbjct: 82  SQFYNGRIVRVPIRCNGTNDKTLASCIVLKIKGTLSCKFFPS 123


>SB_25850| Best HMM Match : XylR_N (HMM E-Value=9.8)
          Length = 203

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -3

Query: 156 EHTEYLHKCFRFSVLVQI--RAAFNTRTEISSHKKYFELKCVGMYHIKG 16
           +HTE L   F+++ LV I  R  F+T     SH+ +  ++ VG+ H KG
Sbjct: 115 DHTEDL---FQYNGLVWITPRVYFSTTGWCGSHRGFISVQRVGVDHTKG 160


>SB_3910| Best HMM Match : XylR_N (HMM E-Value=9.8)
          Length = 253

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -3

Query: 156 EHTEYLHKCFRFSVLVQI--RAAFNTRTEISSHKKYFELKCVGMYHIKG 16
           +HTE L   F+++ LV I  R  F+T     SH+ +  ++ VG+ H KG
Sbjct: 165 DHTEDL---FQYNGLVWITPRVYFSTTGWCGSHRGFISVQRVGVDHTKG 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,794,055
Number of Sequences: 59808
Number of extensions: 353028
Number of successful extensions: 801
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)