Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0956
         (761 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065543-1|BAC05788.1|  324|Homo sapiens seven transmembrane hel...    30   7.8  
AB065452-1|BAC05714.1|  324|Homo sapiens seven transmembrane hel...    30   7.8  

>AB065543-1|BAC05788.1|  324|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 755 YNICDVILTGVLVVFFLISFLCVHLTGHSAFSAHRRSRTPLDCCS 621
           + +C  I T   VV F IS+ C+ +T  S  S+  RS+T   C S
Sbjct: 200 FALCSFIQTSTFVVIF-ISYFCILITVLSIKSSGGRSKTFSTCAS 243


>AB065452-1|BAC05714.1|  324|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 755 YNICDVILTGVLVVFFLISFLCVHLTGHSAFSAHRRSRTPLDCCS 621
           + +C  I T   VV F IS+ C+ +T  S  S+  RS+T   C S
Sbjct: 200 FALCSFIQTSTFVVIF-ISYFCILITVLSIKSSGGRSKTFSTCAS 243


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,019,505
Number of Sequences: 237096
Number of extensions: 1438031
Number of successful extensions: 6335
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6331
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)