Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0952
(322 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 1.6
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 2.8
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 2.8
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 3.8
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 25 3.8
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 3.8
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 25 3.8
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 24 5.0
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 24 5.0
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 24 5.0
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 24 5.0
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 24 6.6
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 24 6.6
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 24 6.6
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 24 6.6
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 23 8.7
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ... 23 8.7
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 23 8.7
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 23 8.7
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 1.6
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -1
Query: 181 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 44
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 40 RVFDGVTQSGLKTPPRGPGRV 102
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 40 RVFDGVTQSGLKTPPRGPGRV 102
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 24.6 bits (51), Expect = 3.8
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -2
Query: 210 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 67
P VSGH LR+ IS SM +ERS R ++ + +
Sbjct: 617 PLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 24.6 bits (51), Expect = 3.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 129 PWNPIEGRYGSEREEHRI 182
P+ P+EG Y + ++ HRI
Sbjct: 3 PYEPVEGLYVNAKQYHRI 20
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 3.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 145 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 44
++ GTR L+ K PD+ ++ G + L T
Sbjct: 8 NVNIQGTRVLKNKLGKIPDIDISTDGKYLLSAST 41
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 24.6 bits (51), Expect = 3.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 285 LETCCGYGYERRDISTYIPHLNFQGPQ 205
LE+C G D++ HL F GPQ
Sbjct: 137 LESCIGGAKALADLTGSKAHLRFTGPQ 163
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 24.2 bits (50), Expect = 5.0
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 259 RTARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFP 92
R++ H+ SPE ++++ R P ++ S PS+ F TL R P
Sbjct: 157 RSSSHIQ-SLSPESKQTSDGHRPPSPTSITTTSTSIDPSVAFSSKSTLATTRTNAP 211
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 24.2 bits (50), Expect = 5.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 100 LFPDLSAASSGHFGLPRRT 44
LFP +S + G F +PRRT
Sbjct: 386 LFPSVSVENFGCFQVPRRT 404
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 24.2 bits (50), Expect = 5.0
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -1
Query: 280 DLLRIWVRTARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 101
D+LR+ R V PSP S S+E TP + +S+ P + + RTL+ K
Sbjct: 73 DILRMLSRALAKNPV-PSPAESESSERRHTP---QTNSQKSQKTPRLSSNKRRTLKNDAK 128
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 24.2 bits (50), Expect = 5.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 186 RKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQATLGYPVEHSFLK 31
+K + +P HI LL + E + + +++ + SRRR L EH LK
Sbjct: 1037 QKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNL---YEHIVLK 1085
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 23.8 bits (49), Expect = 6.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1
Query: 124 EFHGIL*KGDMVRNAKST 177
E+HG+ +G +VRNA ++
Sbjct: 69 EYHGVQARGQLVRNADNS 86
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 23.8 bits (49), Expect = 6.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 90 SGKSFLFCLSVRVPWNPIEGRYGSERE 170
+G LFCLS+ WN +Y R+
Sbjct: 478 AGSLQLFCLSIIKRWNQTGQKYSDLRD 504
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 23.8 bits (49), Expect = 6.6
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = -1
Query: 205 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDE 26
ESI P+ E ++ F GTR L+ + F L +G + RT +
Sbjct: 317 ESIELRPEEAVIDVDELDKNAVLFGGTRVLQVTQSPFCKLKTPDNGVPAIVLRTGFETSQ 376
Query: 25 GTIIETV 5
G+++ T+
Sbjct: 377 GSLVRTM 383
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 23.8 bits (49), Expect = 6.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 261 YERRDISTYIPHLNFQGPQRVSGHRRKCG 175
+ER+ + TYI ++ P+ + G CG
Sbjct: 283 HERQTVYTYIQSRFYRSPEVILGLHYNCG 311
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 23.4 bits (48), Expect = 8.7
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -2
Query: 309 SID*RLFTLETCCGYGYERRDISTYIPHLNFQGPQ--RVSGHRRKCGALRVPNHISL 145
SI + +LE C E D+ Y P++ F + + R+ AL+ H+ L
Sbjct: 1185 SISRKKESLELCLRMNIESIDLQEYAPNIRFTAQKLFNATTSLREFAALKSLRHLPL 1241
>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 201
Score = 23.4 bits (48), Expect = 8.7
Identities = 9/25 (36%), Positives = 11/25 (44%)
Frame = +3
Query: 174 HRICGGVRILSADLENSGEGCTWRC 248
H I G + + EGC WRC
Sbjct: 44 HEIPGSTGVFATMPRPPLEGCRWRC 68
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 23.4 bits (48), Expect = 8.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 242 EMSRRSYPYPQQVSKVKS 295
E+ RRSY PQ SK K+
Sbjct: 182 ELQRRSYETPQSSSKKKT 199
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 23.4 bits (48), Expect = 8.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 264 GYERRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 145
G + +IST +P P++VSGH A R+P+ S+
Sbjct: 374 GTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,857
Number of Sequences: 5004
Number of extensions: 26128
Number of successful extensions: 97
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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