Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0952
(322 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57840.1 68418.m07233 transferase family protein similar to a... 29 0.69
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 29 0.69
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 0.92
At5g42370.1 68418.m05159 expressed protein 29 0.92
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 0.92
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 1.2
At3g29765.1 68416.m03762 hAT dimerisation domain-containing prot... 28 1.6
At5g22390.1 68418.m02612 expressed protein 27 2.1
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 2.1
At5g54180.1 68418.m06746 mitochondrial transcription termination... 27 2.8
At3g03940.1 68416.m00412 protein kinase family protein contains ... 27 2.8
At2g05210.1 68415.m00549 expressed protein 27 2.8
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 27 2.8
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 2.8
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 27 3.7
At4g18470.1 68417.m02738 negative regulator of systemic acquired... 27 3.7
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 27 3.7
At5g63560.1 68418.m07977 transferase family protein similar to h... 26 4.9
At5g25580.1 68418.m03044 expressed protein 26 6.5
At4g31805.1 68417.m04519 WRKY family transcription factor identi... 26 6.5
At1g67560.1 68414.m07697 lipoxygenase family protein similar to ... 26 6.5
At1g03475.1 68414.m00329 coproporphyrinogen III oxidase, putativ... 26 6.5
At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase fa... 25 8.6
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 25 8.6
At3g55810.1 68416.m06201 pyruvate kinase, putative similar to py... 25 8.6
At2g19610.2 68415.m02291 zinc finger (C3HC4-type RING finger) fa... 25 8.6
At2g19610.1 68415.m02290 zinc finger (C3HC4-type RING finger) fa... 25 8.6
At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar ... 25 8.6
>At5g57840.1 68418.m07233 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase from
Dianthus caryophyllus [gi:2239091]
Length = 443
Score = 29.1 bits (62), Expect = 0.69
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 298 EALHLGDLLRIWVRTARHLHVHPSPEFSRSAESIRTPP 185
EA LG ++ W TAR L V +P R+ R PP
Sbjct: 157 EATSLGYIMEAWSLTARGLLVKLTPFLDRTVLHARNPP 194
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 29.1 bits (62), Expect = 0.69
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -1
Query: 262 VRTARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHG 128
+RTAR H PS RS R+ + S R Y PS G G
Sbjct: 167 LRTARGRHKSPSYSPRRSVSCSRSRSRSYSSDRGRSYSPSYGRRG 211
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 0.92
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 210 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 76
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 0.92
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 149 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 39
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 0.92
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 12 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 143
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 205 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 107
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At3g29765.1 68416.m03762 hAT dimerisation domain-containing protein
Length = 536
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 289 HLGDLLRIWVRTARHLHVHP 230
HLGDL R+ V T +HL HP
Sbjct: 441 HLGDLARVMVETRKHLS-HP 459
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 84 ERSGKSFLFCLSVRVPWNPIEG 149
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 247 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 158
H H +P+ S S S+RTPP R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258
>At5g54180.1 68418.m06746 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 500
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 117 SGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLLKQFA 1
SG + ++ T RRL A L Y VEH + + LK FA
Sbjct: 261 SGEDDFATGTVLRRLPAILSYSVEH--MNGQVEFLKSFA 297
>At3g03940.1 68416.m00412 protein kinase family protein contains
Pfam domains, PF00069: Protein kinase domain
Length = 701
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 274 LRIWVRTARHLHVHPSPEFSRSAESIRTPPQ 182
LR R +R L P+P AE+I PPQ
Sbjct: 4 LRSGARRSRRLDEQPNPPLVEQAENIVLPPQ 34
>At2g05210.1 68415.m00549 expressed protein
Length = 364
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -1
Query: 205 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 50
+S T C+ +E Y +GF T TLR+KR L S +F PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 132 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 13
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 132 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 13
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 211 SAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHF 62
S S PP R SS + S F T+++ Q++ FP + AA HF
Sbjct: 10 SMGSSLAPPSNRLSSFVS--ISSSSFGRTQSIAQRKARFPKIYAAKQLHF 57
>At4g18470.1 68417.m02738 negative regulator of systemic acquired
resistance (SNI1) identical to negative regulator of
systemic acquired resistance SNI1 [Arabidopsis thaliana]
gi|5758933|gb|AAD50900
Length = 432
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = -1
Query: 193 TPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTII 14
T PQ S L + +GT +K+ PD+ GH L R T EG I
Sbjct: 332 TVPQAEDSKTLNGILKTFS-NGTNPKNITKKIGPDIVQILIGHAFLARLTFSDPHEGDSI 390
Query: 13 ETVC 2
+C
Sbjct: 391 SEIC 394
>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein similar to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 676
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 166 RSEPYLPSIGFHGTRTLRQKRK 101
R+ PY+P + F G RTL+ +R+
Sbjct: 288 RTFPYVPDMKFSGNRTLKLERQ 309
>At5g63560.1 68418.m07977 transferase family protein similar to
hypersensitivity-related gene product HSR201 - Nicotiana
tabacum, EMBL:X95343; contains Pfam transferase family
domain PF00248
Length = 426
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = -1
Query: 280 DLLRIWVRTARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRK 101
+ L W TAR L + P R+ RTPP++ L I GT L K
Sbjct: 172 EFLNSWAETARGLPLSVPPFLDRTLLRPRTPPKIEFPHNEFEDLEDIS--GTGKLYSDEK 229
Query: 100 L 98
L
Sbjct: 230 L 230
>At5g25580.1 68418.m03044 expressed protein
Length = 405
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 141 IEGRYGSEREEHRICGGVRILSADLEN 221
+ G ++EE R+C + ILS+D +N
Sbjct: 11 VTGEPEQKKEEERLCEDLTILSSDSDN 37
>At4g31805.1 68417.m04519 WRKY family transcription factor identical
to WRKY DNA-binding protein 18 (WRKY18) GI:13506730 from
[Arabidopsis thaliana]
Length = 344
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = -1
Query: 265 WVRTARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEP 155
W + A L PE SRS P CS RS P
Sbjct: 293 WWKDAARLLAQRVPESSRSGLEWCNPDSSTCSERSVP 329
>At1g67560.1 68414.m07697 lipoxygenase family protein similar to
13-lipoxygenase GB:CAA65269 [Solanum tuberosum],
gi:1654140 [Lycopersicon esculentum]
Length = 917
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 187 PQMRCSSRSEPYLPSIGFHGTRTLRQK 107
PQ R RS+P LPS G + LR+K
Sbjct: 209 PQARIIFRSQPCLPSETPDGIKELREK 235
>At1g03475.1 68414.m00329 coproporphyrinogen III oxidase, putative /
coproporphyrinogenase, putative / coprogen oxidase,
putative similar to coproporphyrinogen III oxidase,
chloroplast [precursor] from Glycine max [SP|P35055],
Nicotiana tabacum [SP|Q42946], Hordeum vulgare
[SP|Q42840], ESTs gb|AA586260 and dbj|D48620; contains
Pfam domain coproporphyrinogen III oxidase, aerobic
[PF01218]
Length = 362
Score = 25.8 bits (54), Expect = 6.5
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -1
Query: 256 TARHLHVHPSPEFSRSAESIRTPPQ--MRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLS 83
++ LH P+P R + IR P +RCS E +P T LR + P S
Sbjct: 18 SSHRLHYSPNPSTLRFSRPIRNKPNLALRCSVSIEKEVPETERPFT-FLRDSDDVTPSSS 76
Query: 82 AAS 74
++S
Sbjct: 77 SSS 79
>At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|P95649 CbbY protein
{Rhodobacter sphaeroides}
Length = 316
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 142 IGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT---LVFKDEGTIIET 8
IGF +TLR K + S SS LP R+ L+F +G I+E+
Sbjct: 30 IGFPRFQTLRFKSRSVYSKSRVSSPVSALPLRSLEALIFDCDGVILES 77
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 208 RTLKIQVRDVRGDVAPFVPISAAGLQGEEPLVDRI 312
R L +QV+DV +AP V +S G+ + I
Sbjct: 104 RDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEI 138
>At3g55810.1 68416.m06201 pyruvate kinase, putative similar to
pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
SWISS-PROT:Q42954
Length = 492
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -2
Query: 132 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLLK 10
ME+ GR N + S+ ++ TLG PV S ++ E+LLK
Sbjct: 1 MEMLLGGRATNGALRSKTKIVCTLG-PVSRS-VEMIEKLLK 39
>At2g19610.2 68415.m02291 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 418
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/70 (21%), Positives = 30/70 (42%)
Frame = +3
Query: 57 NPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGC 236
NP+ E+A + FC VPW+ + ++ E + IL + ++ G
Sbjct: 311 NPRHSEEARKCMECGLSFCKKCHVPWHYKKTCDEFKKSESYLKSDAAILESFVKTQGWKK 370
Query: 237 TWRCRAVRTH 266
+C+++ H
Sbjct: 371 CSQCQSIVQH 380
>At2g19610.1 68415.m02290 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 397
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/70 (21%), Positives = 30/70 (42%)
Frame = +3
Query: 57 NPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRYGSEREEHRICGGVRILSADLENSGEGC 236
NP+ E+A + FC VPW+ + ++ E + IL + ++ G
Sbjct: 311 NPRHSEEARKCMECGLSFCKKCHVPWHYKKTCDEFKKSESYLKSDAAILESFVKTQGWKK 370
Query: 237 TWRCRAVRTH 266
+C+++ H
Sbjct: 371 CSQCQSIVQH 380
>At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar to
cinnamoyl-CoA reductase GB:CAA56103 [Eucalyptus gunnii],
Pinus taeda [GI:17978649]; contains non-consensus GG
acceptor splice site at exon 4
Length = 317
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 15 IIVPSSLKTSVRRGNPKWPEDAAE 86
++V SS+ V NPKWP+D A+
Sbjct: 116 VVVVSSIAAVVY--NPKWPQDVAK 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,399,925
Number of Sequences: 28952
Number of extensions: 146503
Number of successful extensions: 487
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -