Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0950
         (374 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   4.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   5.4  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   5.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    20   7.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   7.2  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    20   9.5  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    20   9.5  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    20   9.5  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 228 RQVRKRRPVLHLQSPIQRCLGARYDRERLGRPQG 127
           +Q R+R  V  ++ P  + L  RY+ E  GR  G
Sbjct: 57  QQARRRAFVKIIEQPASKALRFRYECE--GRSAG 88


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 330 YWLYLVL 350
           YWLYLVL
Sbjct: 59  YWLYLVL 65


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 330 YWLYLVL 350
           YWLYLVL
Sbjct: 77  YWLYLVL 83


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 125 VGHDGEVAGLPDIYSWF 75
           +GH  E    P +YS+F
Sbjct: 103 LGHPLESVPFPQVYSYF 119


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 101 RRLHHRVQRPCG 136
           RR HH V   CG
Sbjct: 257 RRRHHLVHHKCG 268


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 1   FLRMLVYYIIHEHITVPLVV 60
           F+R + YY+I  +I   L+V
Sbjct: 63  FVRSMGYYLIQIYIPSGLIV 82


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 165 LQGIVELAIVDEEQ 206
           L  IVE+ +VDE Q
Sbjct: 576 LNAIVEIVLVDEVQ 589


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 339 YLVLWILKYTL 371
           Y +LWIL +TL
Sbjct: 33  YSLLWILLFTL 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,764
Number of Sequences: 336
Number of extensions: 1164
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7828090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)