Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0950
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.078
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    30   0.10 
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    27   1.3  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    24   9.0  

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 30.7 bits (66), Expect = 0.078
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -2

Query: 352 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 260
           +++ YN+   M T++C+C+S  +  YGGN A
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLA 76


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 30.3 bits (65), Expect = 0.10
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 352 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADR 254
           HN  +N + + S T+ +  SR+ V+  GNS+ R
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSSRR 649


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 148 TPRETARPLDTMVKSPVFLTSTRGSLHLSK 59
           TPRETA+ L  ++ +P      R SL   K
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSLTTPK 236


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 70  VMNHE*MSGRPATSPSCPTALRSPEAFTIVPSSKASLN 183
           +M+H+ +   P    S P+++ S    T+ PSS AS++
Sbjct: 30  LMSHDSIFDGPGLGTSIPSSVSSFHHQTLRPSSDASVS 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,241,417
Number of Sequences: 5004
Number of extensions: 20807
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)