Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0950
         (374 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980...    28   2.1  
11_04_0109 - 13532432-13532988,13533267-13533450                       27   6.3  
06_03_0830 + 25159758-25162460                                         27   6.3  
06_01_1082 - 8847795-8848033,8848511-8848724                           27   6.3  

>06_03_1274 +
           28897491-28897707,28897804-28897935,28898029-28898096,
           28898216-28898280,28898468-28898534,28898630-28898917,
           28898995-28899102,28899236-28899487,28899918-28899997,
           28900092-28900185,28900728-28900810,28901319-28901873,
           28902085-28902616
          Length = 846

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -1

Query: 221 YENDVLFFIYNRQFNDALELGTIVNASGDRKAVGHDGEVAGLPD 90
           Y   V FF YN+ F+  + + T+V  +G+  ++G  G +  L D
Sbjct: 764 YSGSVGFFSYNKTFDLNIVIRTVVLHNGE-ASIGAGGAIVALSD 806


>11_04_0109 - 13532432-13532988,13533267-13533450
          Length = 246

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 202 NRTSFSYLAGWKNHCSLVCQRC 267
           +R++  ++A WK H  L+ Q C
Sbjct: 71  DRSTLLHIAAWKGHSDLIAQLC 92


>06_03_0830 + 25159758-25162460
          Length = 900

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 176 DALELGTIVNASGDRKAVGHDGEVAGLPDIYS 81
           DALE+  +V    +R+ + + G   G PDI S
Sbjct: 404 DALEVARLVAIEVEREVIDYRGPFCGSPDINS 435


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 242 WFFQPAKYENDVLFFIYNRQFNDALELG 159
           W      Y  DVL F YN++++D   +G
Sbjct: 59  WLAGKTFYAGDVLVFKYNKEYHDVAVVG 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,102,185
Number of Sequences: 37544
Number of extensions: 137716
Number of successful extensions: 407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)