Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0950
         (374 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26001| Best HMM Match : HEAT (HMM E-Value=3.6)                      27   3.7  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           27   6.5  

>SB_26001| Best HMM Match : HEAT (HMM E-Value=3.6)
          Length = 450

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 352 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSADR 254
           H TK N YLK+     +   R+  VY G + DR
Sbjct: 64  HQTKKNLYLKLDEILIDALHREFEVYPGATVDR 96


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 27  YS*TYNSAFGRLERCNEPRVDVRK 98
           Y     S  G +ERCN P VD+R+
Sbjct: 212 YPQVVGSCVGIVERCNAPTVDLRR 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,531,193
Number of Sequences: 59808
Number of extensions: 167835
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)