Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0950
         (374 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    28   2.5  
AF039720-11|AAK68359.1|  260|Caenorhabditis elegans Hypothetical...    27   3.3  
Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    26   7.6  
U58761-2|AAB00713.1|  308|Caenorhabditis elegans Hypothetical pr...    26   7.6  
U41535-4|AAB63407.1|  655|Caenorhabditis elegans Hypothetical pr...    26   7.6  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    26   7.6  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    26   7.6  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    26   7.6  

>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 181 STMPWSSVRS*TPRETARPLDTMVKSPVFLTST 83
           ST   ++  + TP+ + +P  T  KSPV +T+T
Sbjct: 388 STKKLTTTTTTTPKPSQKPTTTTTKSPVVITTT 420


>AF039720-11|AAK68359.1|  260|Caenorhabditis elegans Hypothetical
           protein F33D11.12 protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 238 NHCSLVCQRCCRRIQH 285
           +HCS VC+RC RR+ H
Sbjct: 98  HHCS-VCERCIRRMDH 112


>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 170 LELGTIVNASGDRKAVGHDGEVAGLPDIY 84
           ++LG + +  GD   VG DGE    PD Y
Sbjct: 221 VDLGRLHDLHGDSITVGADGEKVDRPDDY 249


>U58761-2|AAB00713.1|  308|Caenorhabditis elegans Hypothetical
           protein C01F1.5 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +3

Query: 72  NEPRVDVRKTGDFTIVSNGLAVSRGVHDRTEL 167
           N P V +RK+G F   S+  AV  G+ DRT L
Sbjct: 107 NSPHVLIRKSGKFAAYSD--AVVEGLVDRTIL 136


>U41535-4|AAB63407.1|  655|Caenorhabditis elegans Hypothetical
           protein F18A1.5 protein.
          Length = 655

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 221 YENDVLFF--IYNRQFNDALELGTIVNASGDRKAVGHDGEVAGLPDIYSWFITPF*TTK 51
           Y   V+ F  +  R+FN    LGT     G    +    E+AG+ ++Y W+     TT+
Sbjct: 410 YVQKVIAFKGVIPREFNGGFSLGT-----GSATRIISVPEIAGVSELYDWYANVKPTTE 463


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 167  ELGTIVNASGDRKAVGHDGEVAGLP-DIYSWFITP 66
            E GT++  + D K +G DG+V  LP D Y  +I P
Sbjct: 8774 EDGTVIENNEDGKPIGPDGQV--LPTDAYGNYIYP 8806


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 167  ELGTIVNASGDRKAVGHDGEVAGLP-DIYSWFITP 66
            E GT++  + D K +G DG+V  LP D Y  +I P
Sbjct: 8819 EDGTVIENNEDGKPIGPDGQV--LPTDAYGNYIYP 8851


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 167  ELGTIVNASGDRKAVGHDGEVAGLP-DIYSWFITP 66
            E GT++  + D K +G DG+V  LP D Y  +I P
Sbjct: 8819 EDGTVIENNEDGKPIGPDGQV--LPTDAYGNYIYP 8851


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,993,366
Number of Sequences: 27780
Number of extensions: 120695
Number of successful extensions: 350
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)