Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0946
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   162   2e-42
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   162   2e-42
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.3  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  162 bits (394), Expect = 2e-42
 Identities = 74/84 (88%), Positives = 78/84 (92%)
 Frame = +1

Query: 1   KIFKSDGLIGLYRGFGVSVQGIIIYRALYFGFYDTARGMLPDPKNTPIVISWAIAQTVTT 180
           KIFK+DG+ GLYRGFGVSVQGIIIYRA YFGFYDTARGMLPDPK TP +ISW IAQ VTT
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTT 224

Query: 181 VAGIISYPFDTVRRRMMMQSGRAK 252
           VAGI+SYPFDTVRRRMMMQSGRAK
Sbjct: 225 VAGIVSYPFDTVRRRMMMQSGRAK 248



 Score = 94.3 bits (224), Expect = 7e-22
 Identities = 41/53 (77%), Positives = 48/53 (90%)
 Frame = +3

Query: 249 QEDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 407
           + +ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 248 KSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 30.3 bits (65), Expect = 0.014
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 252 EDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 353
           E+  YK  I C+  I K +G  ++++G  +NV+R
Sbjct: 49  EEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  162 bits (394), Expect = 2e-42
 Identities = 74/84 (88%), Positives = 78/84 (92%)
 Frame = +1

Query: 1   KIFKSDGLIGLYRGFGVSVQGIIIYRALYFGFYDTARGMLPDPKNTPIVISWAIAQTVTT 180
           KIFK+DG+ GLYRGFGVSVQGIIIYRA YFGFYDTARGMLPDPK TP +ISW IAQ VTT
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTT 224

Query: 181 VAGIISYPFDTVRRRMMMQSGRAK 252
           VAGI+SYPFDTVRRRMMMQSGRAK
Sbjct: 225 VAGIVSYPFDTVRRRMMMQSGRAK 248



 Score = 94.3 bits (224), Expect = 7e-22
 Identities = 41/53 (77%), Positives = 48/53 (90%)
 Frame = +3

Query: 249 QEDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 407
           + +ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 248 KSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 30.3 bits (65), Expect = 0.014
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 252 EDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 353
           E+  YK  I C+  I K +G  ++++G  +NV+R
Sbjct: 49  EEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 397 LISSYKTSTKAPPVPLRTLEKAPL 326
           L++++KT T+ P    + LEK P+
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGPV 157


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 492 VSNNT*SEGSGCDTESHRNYGNNSY 418
           +SNNT    +     ++ NY NN+Y
Sbjct: 84  LSNNTIHNNNYKYNYNNNNYNNNNY 108


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 492 VSNNT*SEGSGCDTESHRNYGNNSY 418
           +SNNT    +     ++ NY NN+Y
Sbjct: 84  LSNNTIHNNNYKYNYNNNNYNNNNY 108


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 468 GSGCDTESHRNYGNNSYVRF 409
           GS  D+++  N+G  S VRF
Sbjct: 587 GSTTDSQTEDNFGPLSNVRF 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,593
Number of Sequences: 438
Number of extensions: 2644
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)