Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0945
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    27   0.68 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.6  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   4.8  

>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 0.68
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 324 AEGERELVTGFNIEYRRGGFALIFW 250
           ++GE+ +V  +++ Y + GF LIFW
Sbjct: 257 SKGEQLIVPTWDMAYEKFGFMLIFW 281


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 259 NFLAEYSSILFIRMILVIINMGGYNLRFFFYLKLRLISFL 140
           NF   Y  I+    +  I ++  ++  FF +L   L+SF+
Sbjct: 156 NFFLLYHQIILSHSLFHISHLISFHFLFFSFLSFPLLSFI 195


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 265  CFNFLAEYSSILFIRM-ILVIINMGGYNLRFFF 170
            CF ++A YS+I FI + IL   N    + +F F
Sbjct: 1070 CFQYMALYSAIQFITVSILYTTNSNLGDFQFLF 1102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 930,448
Number of Sequences: 5004
Number of extensions: 14089
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)