Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0945
         (362 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   3.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   3.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   3.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   7.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   7.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 71  IFTYFIKLFIIIF 33
           I+ YF+ LF+II+
Sbjct: 222 IWVYFVPLFLIIY 234


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 229 FIRMILVIINMGGYNL 182
           FIR++LVI+   GY L
Sbjct: 54  FIRIVLVILLRAGYVL 69


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 71  IFTYFIKLFIIIF 33
           I+ YF+ LF+II+
Sbjct: 98  IWVYFVPLFLIIY 110


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 273 LFYIQY*IQ*LTLFHLQQNQKEFDLF 350
           L+Y Q   +   LF L  + K+FD+F
Sbjct: 99  LYYPQLLREMSALFKLFYHAKDFDIF 124


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 273 LFYIQY*IQ*LTLFHLQQNQKEFDLF 350
           L+Y Q   +   LF L  + K+FD+F
Sbjct: 99  LYYPQLLREMSALFKLFYHAKDFDIF 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,427
Number of Sequences: 438
Number of extensions: 1089
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)