Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0942
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    26   0.20 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   4.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.5  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    20   10.0 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    20   10.0 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   10.0 

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.8 bits (54), Expect = 0.20
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 407 TICNDRYILSLNHCEIETRKTIKMTIFTKKNWN 309
           TI + RY+L+  HC I+   T    +  + +W+
Sbjct: 191 TIISKRYVLTAAHCIIDENTTKLAIVVGEHDWS 223


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 293 LFCVHNGETKFYY 255
           +FC +NGE + YY
Sbjct: 41  VFCRNNGEEEAYY 53


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 66  SRSFNYACKYVK*MD 22
           S +F+Y  KY+K MD
Sbjct: 229 SNTFDYDPKYIKMMD 243


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = -1

Query: 333 YFHKKKLEHIIISFVLCSQWRDEVLLPIV*TIFRFSSAKIKQIFGSVIGVCI 178
           Y  K       ++FV  S W  + +L +   +  F    +++  G V G C+
Sbjct: 104 YIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCL 155


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = -1

Query: 333 YFHKKKLEHIIISFVLCSQWRDEVLLPIV*TIFRFSSAKIKQIFGSVIGVCI 178
           Y  K       ++FV  S W  + +L +   +  F    +++  G V G C+
Sbjct: 120 YIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCL 171


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = -1

Query: 333 YFHKKKLEHIIISFVLCSQWRDEVLLPIV*TIFRFSSAKIKQIFGSVIGVCI 178
           Y  K       ++FV  S W  + +L +   +  F    +++  G V G C+
Sbjct: 177 YIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCL 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,017
Number of Sequences: 438
Number of extensions: 2171
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)