Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0941
         (691 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q027I6 Cluster: Peptidase M28 precursor; n=2; Solibacte...    34   2.9  
UniRef50_UPI00006CAE5F Cluster: MutS domain V family protein; n=...    33   5.0  
UniRef50_A2F1K8 Cluster: Surface antigen BspA-like; n=1; Trichom...    33   5.0  

>UniRef50_Q027I6 Cluster: Peptidase M28 precursor; n=2; Solibacter
           usitatus Ellin6076|Rep: Peptidase M28 precursor -
           Solibacter usitatus (strain Ellin6076)
          Length = 491

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -3

Query: 590 QKYSCHIFIQLT-FRIQKQNGNVLKNVMLYNVIIVLLSTFLP 468
           Q YS  + ++   FR++KQ   + K+V LYNV+ VL  T +P
Sbjct: 82  QSYSPKLQVRFEKFRVKKQGQRIFKDVDLYNVVAVLPGTKMP 123


>UniRef50_UPI00006CAE5F Cluster: MutS domain V family protein; n=1;
           Tetrahymena thermophila SB210|Rep: MutS domain V family
           protein - Tetrahymena thermophila SB210
          Length = 1081

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 23/59 (38%), Positives = 29/59 (49%)
 Frame = -3

Query: 689 LYNNFIFTQTANKYVHTNTLTVTLVRFNKST*FQKYSCHIFIQLTFRIQKQNGNVLKNV 513
           LYN   FT T    VHT T    LV+ NKS    K     F+ L   +Q  N N+L+N+
Sbjct: 757 LYNAHKFTYTTKNLVHTLTKYTQLVQQNKSNRLPKLD-RRFMSLLMSLQ-SNTNMLQNL 813


>UniRef50_A2F1K8 Cluster: Surface antigen BspA-like; n=1;
           Trichomonas vaginalis G3|Rep: Surface antigen BspA-like
           - Trichomonas vaginalis G3
          Length = 823

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 460 IPYGRNVDSNTIITLYNI--TFFRTFPFCFCIRNVS*IKI 573
           +  GRN+ SNT I  +NI  +    +P CFC  NV  I I
Sbjct: 162 VEIGRNIISNTKIRTFNIPASVTNLYPSCFCYSNVESISI 201


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,525,208
Number of Sequences: 1657284
Number of extensions: 11600266
Number of successful extensions: 28520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28510
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)