Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0941
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    29   3.5  
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098...    29   4.6  
12_01_0169 - 1263679-1264349,1264437-1264641                           28   8.0  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    28   8.0  

>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
            26834330-26834732,26834840-26835118,26835285-26835716,
            26836362-26836838,26837171-26837212,26837285-26837545,
            26837637-26838938,26839146-26839575,26839643-26840046,
            26840360-26840716,26840842-26841102,26841494-26842141,
            26842231-26842452,26842547-26842768,26842860-26843009,
            26843739-26844111,26844467-26844689,26845167-26845425,
            26845585-26845920,26846013-26846999,26848395-26849624,
            26849706-26849768,26849858-26849910,26849998-26850079,
            26850520-26850588,26851070-26851129,26851205-26851267,
            26851993-26852101,26852742-26852827,26853120-26853847,
            26854613-26854676
          Length = 3716

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +3

Query: 510  HHIFQNVSVLFLYTKCELNKNMTRVFLKLCRFIEPYQSYRQCVC-MYIFVRGLC--ENKI 680
            HH  + +   + + K E N +    F+ +C F+E YQ+  + +  ++I +   C  ENK+
Sbjct: 1749 HHRKELIKFGWNHLKREDNSSKQWAFVNVCHFLEAYQAPEKIILQVFIALLRTCQPENKL 1808

Query: 681  II 686
            ++
Sbjct: 1809 LV 1810


>05_03_0614 -
           16206005-16206586,16207585-16207608,16209746-16209879,
           16210703-16210832
          Length = 289

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
 Frame = +3

Query: 222 DLCTVLKSYKNYDSSVYI-------DSRQNCLC*CRRVDSSTCPVRSGSGG 353
           DL TV++SYK YD SV I       D R++         S   P+RSG GG
Sbjct: 64  DLPTVVESYKTYDDSVLIKTADIGQDRRESQHQLDLEEASQQGPLRSGKGG 114


>12_01_0169 - 1263679-1264349,1264437-1264641
          Length = 291

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 5   CSYAHAHECRAFPLALSLSIPPPQER*TFNSTLLEVALEVS 127
           C +  AH      LA  + +PPP    T N T  EVA  V+
Sbjct: 55  CLFPSAHRLLPDLLAAKMGLPPPPLISTLNGTAAEVARGVN 95


>04_04_1035 +
           30283456-30283536,30284823-30285359,30285508-30286512,
           30286718-30287042,30287563-30287818,30287901-30288117,
           30288743-30289095,30289330-30289833,30291267-30292467,
           30292614-30292970,30293258-30293495,30294083-30295125,
           30295234-30296649,30296731-30296855,30297036-30297314,
           30297352-30297382,30298957-30299022,30299447-30299689,
           30299848-30299898,30299980-30300071,30300182-30300249,
           30300515-30300600,30300720-30300824,30300994-30301127,
           30302403-30302436,30302620-30302892,30303019-30303288,
           30303384-30303974,30304065-30304214
          Length = 3376

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 301 DVDVWTVQRALSGLVAAVR*KCYFHIKYSNIRMLFTS 411
           DV    +++ +  L+  +  KC+ H   SNI MLF S
Sbjct: 394 DVTATALKKCIMNLLIHLPRKCFSHDSISNISMLFDS 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,042,055
Number of Sequences: 37544
Number of extensions: 289062
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)