Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0941
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56708| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05)             30   2.0  

>SB_56708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 339 TGQGTLNCPHVYINTDSFVYYQYRR 265
           +G+GT+NC HV++  D+   Y+YRR
Sbjct: 68  SGKGTVNC-HVFVVADAHQAYRYRR 91


>SB_43504| Best HMM Match : Urotensin_II (HMM E-Value=0.05)
          Length = 444

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = +3

Query: 93  TQPCWKSH*KFHFKNECVQNFVKFNYTYTCLSVYYVYLMRVD--EDLCTVLKSYKNYDSS 266
           T  C   + ++    +C+  + ++  TY C++ Y  Y+   D     C  + +Y   +  
Sbjct: 269 TYDCMNGYCRYVSTYDCINGYCRYVSTYDCMNGYCRYVSTYDCMNGYCRYVSTYDCMNGY 328

Query: 267 VYIDSRQNCLC*CRRVDSSTC 329
               S  +C   CR V +  C
Sbjct: 329 CRYVSTYDCY--CRYVSTYDC 347



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
 Frame = +3

Query: 93  TQPCWKSH*KFHFKNECVQNFVKFNYTYTCLSVYYVYLMRVD--EDLCTVLKSYKNYDSS 266
           T  C   + ++    +C+  + ++  TY C++ Y  Y+   D     C  + +Y   +  
Sbjct: 106 TYDCMNGYSRYVSTYDCMNGYCRYVSTYDCMNGYCRYVSTYDCMNGYCRYVSTYDCMNGY 165

Query: 267 VYIDSRQNCL-C*CRRVDSSTCPVR 338
               S  +C+   CR V +  C  R
Sbjct: 166 CRYVSTYDCMNGYCRYVSTYDCYCR 190



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
 Frame = +3

Query: 93  TQPCWKSH*KFHFKNECVQNFVKFNYTYTCLSVYYVYLMRVD--EDLCTVLKSYKNYDSS 266
           T  C   + ++    +C+  + ++  TY C++ Y  Y+   D     C  + +Y   +  
Sbjct: 217 TYDCMNGYSRYVSTYDCMNGYCRYVSTYDCMNGYCRYVSTYDCMNGYCRYVSTYDCMNGY 276

Query: 267 VYIDSRQNCL-C*CRRVDSSTC 329
               S  +C+   CR V +  C
Sbjct: 277 CRYVSTYDCINGYCRYVSTYDC 298



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
 Frame = +3

Query: 93  TQPCWKSH*KFHFKNECVQNFVKFNYTYTCLSVYYVYLMRVD--EDLCTVLKSYKNYDSS 266
           T  C   + ++    +C+  + ++  TY C++ Y  Y+   D     C  + +Y   +  
Sbjct: 344 TYDCMNGYCRYVSTYDCMNGYCRYVSTYDCMNGYCRYVSTYDCMNGYCRYVSTYDCMNGY 403

Query: 267 VYIDSRQNCL-C*CRRVDSSTC 329
               S  +C+   CR V +  C
Sbjct: 404 CRYVSTYDCMNGYCRYVSTYDC 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,811,926
Number of Sequences: 59808
Number of extensions: 380451
Number of successful extensions: 941
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)