Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0941
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.68 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.1  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   8.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 648 CTYKHTDGNFGKVQ*IYIVSKILLSYFYSTHI 553
           CT  ++ GNF  ++ ++++ + L  Y + T+I
Sbjct: 222 CTQVYSTGNFTCLEVVFVLKRRLGYYLFHTYI 253


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 648 CTYKHTDGNFGKVQ*IYIVSKILLSYFYSTHI 553
           CT +++ GNF  +Q ++ + + L  + + T+I
Sbjct: 191 CTIEYSTGNFTCIQIVFNLRRRLGYHLFHTYI 222


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 150 NFVKFNYTYTCLSVYY 197
           N  K+NY   C  +YY
Sbjct: 94  NNYKYNYNNNCKKLYY 109


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 174 YTCLSVYYVYLMRVDEDLCTV 236
           ++CL  + + L+ +D   CTV
Sbjct: 376 WSCLFFFMLILIGLDSQFCTV 396


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 174 YTCLSVYYVYLMRVDEDLCTV 236
           ++CL  + + L+ +D   CTV
Sbjct: 429 WSCLFFFMLILIGLDSQFCTV 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,012
Number of Sequences: 438
Number of extensions: 3726
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)