Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0941
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54030.1 68418.m06720 DC1 domain-containing protein contains ...    29   2.9  
At5g44635.1 68418.m05469 minichromosome maintenance family prote...    29   3.8  
At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger) fa...    28   5.1  

>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 419

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +3

Query: 39  SLSLCLFLFPLHRSVKRLTQPCWKSH*KFHFKNECVQNFVKFNYTYTCLSVYYVY 203
           S SLCLF   L   V R+   C     K H  +EC+ N +  N  + C  +  VY
Sbjct: 34  SCSLCLFSTFLGEIVTRIRYQCMDCGLKLH--DECI-NSLSLNRPFLCNHILKVY 85


>At5g44635.1 68418.m05469 minichromosome maintenance family protein
           / MCM family protein similar to SP|P97311 DNA
           replication licensing factor MCM6 {Mus musculus};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 831

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 282 YYQYRRYCHNFCKTLVLCTSPRPLA*DKHNKLTNMYMYN 166
           Y ++  Y  N CK  V+  +P  ++ D  NK  N+  YN
Sbjct: 75  YLRFEPYLRNACKRFVIEMNPSFISDDTPNKDINVSFYN 113


>At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 369

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 365 VIFTLNIQIYVCYLLHVIVNFYLFFSKFKYNKYPME 472
           +I  L++  ++C +LH++V +YL   +   +  P E
Sbjct: 56  IIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNE 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,487,535
Number of Sequences: 28952
Number of extensions: 256626
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)