Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0938
         (340 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CB9DE Cluster: hypothetical protein TTHERM_0055...    33   0.95 
UniRef50_O05967 Cluster: Outer membrane protein; n=11; Rickettsi...    33   0.95 
UniRef50_Q4DKW9 Cluster: Putative uncharacterized protein; n=1; ...    31   5.1  
UniRef50_Q7R8D2 Cluster: Splicing factor 3a subunit 3; n=1; Plas...    31   6.7  
UniRef50_UPI0000498444 Cluster: cyclin; n=1; Entamoeba histolyti...    30   8.8  
UniRef50_Q7RPL1 Cluster: Cation-transporting ATPase; n=4; Plasmo...    30   8.8  

>UniRef50_UPI00006CB9DE Cluster: hypothetical protein
           TTHERM_00556710; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00556710 - Tetrahymena
           thermophila SB210
          Length = 473

 Score = 33.5 bits (73), Expect = 0.95
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -2

Query: 249 RLQQNHNFQTIKPPYGSNCDLNLIDMIR---LKIRIYCH 142
           R  Q+ NFQ I+ PY  N DL LI +I+   +  R+ CH
Sbjct: 249 RSVQSQNFQYIQIPYNENLDLRLIRLIKQNEVTKRVLCH 287


>UniRef50_O05967 Cluster: Outer membrane protein; n=11;
           Rickettsia|Rep: Outer membrane protein - Rickettsia
           prowazekii
          Length = 266

 Score = 33.5 bits (73), Expect = 0.95
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = -1

Query: 151 LLSHYTYEC*IFSKKLDFSL*ETMKLFQKI*LTLRPL 41
           +++ Y Y C  F KK DFS+ E +K  QK+ + LRPL
Sbjct: 114 IIAFYDYNC-SFCKKGDFSINELLKNDQKVKVVLRPL 149


>UniRef50_Q4DKW9 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 289

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -3

Query: 152 FIVTLHL*MLDIF*EIRFFSLGNYEIVPEDIVNSTSTQTFRIN 24
           F + L L  L +F     FSL  Y+I+P  +++S+S+ TFR+N
Sbjct: 58  FFILLSL-SLSLFFFFFLFSLPPYQILPSLLLSSSSSLTFRMN 99


>UniRef50_Q7R8D2 Cluster: Splicing factor 3a subunit 3; n=1;
           Plasmodium yoelii yoelii|Rep: Splicing factor 3a subunit
           3 - Plasmodium yoelii yoelii
          Length = 585

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = -1

Query: 229 FSNNQTTVWEQL*FKSNRYDKIKNSNLLSHYTYEC*IFSKKLDFSL*ETMK 77
           F N Q   WE+  +  N Y KI +    S  TY+  + SKK D    + MK
Sbjct: 256 FQNKQIKSWEKFTYDLNYYCKINDKLYASDGTYQGYLKSKKYDEEFKKYMK 306


>UniRef50_UPI0000498444 Cluster: cyclin; n=1; Entamoeba histolytica
           HM-1:IMSS|Rep: cyclin - Entamoeba histolytica HM-1:IMSS
          Length = 398

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -1

Query: 229 FSNNQTTVWEQL*FKSNRYDKIKNSNLLSHYTYEC*IFSKKLDFSL*ETMKLFQKI 62
           F+NNQ+ +   L FK   ++K+KN++LL+        F  + +  L +  +L +K+
Sbjct: 3   FNNNQSNIANTLHFKIKDFNKLKNNHLLTLMNISTKPFMNENEQPLQQPNQLIEKL 58


>UniRef50_Q7RPL1 Cluster: Cation-transporting ATPase; n=4; Plasmodium
            (Vinckeia)|Rep: Cation-transporting ATPase - Plasmodium
            yoelii yoelii
          Length = 1682

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 192  DLNLIDMIRLKIRIYCHITPMNVRYFLR 109
            ++NLIDM+  K+ I+C ++P N    ++
Sbjct: 1267 NINLIDMLINKVHIFCRVSPKNKEIIIK 1294


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 307,815,420
Number of Sequences: 1657284
Number of extensions: 5370536
Number of successful extensions: 8875
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8875
length of database: 575,637,011
effective HSP length: 88
effective length of database: 429,796,019
effective search space used: 10315104456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)