Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0938
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    24   7.3  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    24   7.3  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    23   9.6  

>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 237 NHNFQTIKPPYGSNCDLNLIDMIRLKIRIYCHITPMNVRYFLRN 106
           NH+ + I+  +G + +LN +  + +K+      + M    FL+N
Sbjct: 694 NHSPKPIQKFWGKSVELNTLGPVTIKLACGTEFSFMKPACFLKN 737


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 278 TIISVGHNRVGYSRIIIFKQSNHRMGAIV 192
           TII+  +NR+   R+ ++ Q++  MGA+V
Sbjct: 288 TIITKLYNRISTMRLGMYTQNDVDMGAMV 316


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 144 DNKFEFLILSYRLDLNHNCSHTVV*LFENYDSAV-TYTIMSNANYSDGXENYHLHKCISI 320
           + KF    L+Y  DL  +    ++ L  N+ +   +  +  N N  DG E  + H CIS+
Sbjct: 199 NGKFTNYFLAYPSDLPRHDREGLLELTHNWGTEKESGPVYHNGN--DGDEKGYGHVCISV 256

Query: 321 GEV 329
             +
Sbjct: 257 DNI 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,114
Number of Sequences: 5004
Number of extensions: 25110
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)