Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0938
         (340 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1328 + 36347963-36347984,36348609-36348764,36349083-363492...    27   2.8  
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535...    26   8.7  

>01_06_1328 +
           36347963-36347984,36348609-36348764,36349083-36349261,
           36349347-36349442,36349525-36349594,36349635-36349705,
           36350654-36351286
          Length = 408

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/37 (29%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -2

Query: 225 QTIKPPYGSNCDLNLIDMI-RLKIRIYCHITPMNVRY 118
           Q +   +G +CD+++ +   R+K +I+C I+ ++VR+
Sbjct: 77  QYVSNTFGISCDISVNNYPGRIKSKIFCWISSLDVRF 113


>11_08_0007 +
           27551173-27551828,27552071-27552282,27553371-27553550,
           27555154-27556187
          Length = 693

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 246 LQQNHNFQTIKPPYGSNCDLNLIDMIRLKIRIYCHI 139
           L  NH+F T   PY  N ++  I +   +IR+Y H+
Sbjct: 61  LSCNHSF-TPPRPYTGNVEIKDISLEAGEIRLYTHV 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,614,608
Number of Sequences: 37544
Number of extensions: 123730
Number of successful extensions: 187
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)