Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0938
         (340 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_15799| Best HMM Match : PH (HMM E-Value=0.76)                       26   9.0  
SB_46196| Best HMM Match : DUF1029 (HMM E-Value=3.6)                   26   9.0  
SB_15380| Best HMM Match : RA (HMM E-Value=0.11)                       26   9.0  

>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 237 NHNFQTIKPPYGSNCDL--NLIDMIRLKIRIYC 145
           N+ FQT KPP G +C +     +M+  K  + C
Sbjct: 580 NYEFQTNKPPSGGSCAVTPETGEMLNTKFTLSC 612


>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
          Length = 836

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 214 TTVWEQL*FKSNRYDKIKNSNLLSHYT 134
           TT  EQ  FK  + +K+KN+ ++ H T
Sbjct: 86  TTCMEQSCFKITQKNKVKNAEMVIHIT 112


>SB_46196| Best HMM Match : DUF1029 (HMM E-Value=3.6)
          Length = 448

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 6   F*NFSYIYSKCLSGRRVNYIFWNN 77
           F +FSY  SK  S  ++NY+ W N
Sbjct: 271 FQHFSYSNSKMNSKLKLNYVLWLN 294


>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
          Length = 2124

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 246  LQQNHNFQTIKPPYGSNCD 190
            LQ +   QT+KPP G+ C+
Sbjct: 1540 LQADEVLQTVKPPQGAQCN 1558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,455,275
Number of Sequences: 59808
Number of extensions: 163086
Number of successful extensions: 246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)