Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0938
         (340 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical pr...    27   2.6  
AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical ...    27   2.6  
Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AL034365-8|CAA22260.2|  364|Caenorhabditis elegans Hypothetical ...    26   7.9  

>Z93390-7|CAB07677.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 238 ES*FSNNQTTVWEQL*F--KSNRYDKIKNSNLLSHYTYEC*IFSKKLD 101
           ES + ++    W  L F  K N  + +KNSNL  H  YE  +  +++D
Sbjct: 367 ESDYVSSHLHEWIDLIFGYKQNGEEAVKNSNLFHHLFYEGSVDFERID 414


>AL032675-2|CAA21780.1|  931|Caenorhabditis elegans Hypothetical
           protein VT23B5.2 protein.
          Length = 931

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 238 ES*FSNNQTTVWEQL*F--KSNRYDKIKNSNLLSHYTYEC*IFSKKLD 101
           ES + ++    W  L F  K N  + +KNSNL  H  YE  +  +++D
Sbjct: 367 ESDYVSSHLHEWIDLIFGYKQNGEEAVKNSNLFHHLFYEGSVDFERID 414


>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
           protein C27B7.7 protein.
          Length = 1471

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 205 WEQL*FKSNRYDKIKNSNLLSHYTYEC*IF 116
           W+ L FKS+   K+    L+ ++TYE  IF
Sbjct: 192 WKSLNFKSDFDGKVLLDGLIPNHTYEIKIF 221


>AL034365-8|CAA22260.2|  364|Caenorhabditis elegans Hypothetical
           protein Y69E1A.8 protein.
          Length = 364

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 36  CLSGRRVNYIFWNNF 80
           CLSG++ N  FW N+
Sbjct: 345 CLSGKKFNIAFWKNW 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,425,559
Number of Sequences: 27780
Number of extensions: 136483
Number of successful extensions: 232
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)