Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0938
         (340 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g11270.1 68415.m01208 citrate synthase-related contains simil...    29   0.60 
At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein...    27   2.4  
At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein...    27   2.4  
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr...    26   5.6  
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ...    25   9.7  

>At2g11270.1 68415.m01208 citrate synthase-related contains
           similarity to Swiss-Prot:P20115 citrate synthase,
           mitochondrial precursor [Arabidopsis thaliana]
          Length = 83

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 153 FEFLILSYRLDLNHNCSHTVV*LFENYDSAVTYTIMSNANYSDGXENYHL-HKCISIGEV 329
           F  LI+ + L+ N    H V+ LF  Y    +YT  +  N+ D  +   L H  + +G +
Sbjct: 3   FRHLIIPFNLNNNRGRFHVVIKLFSLYSRETSYT-NTTFNFQDRSKKLKLKHGKVPVGNI 61


>At5g65930.2 68418.m08300 kinesin-like calmodulin-binding protein
           (ZWICHEL) identical to kinesin-like protein GI:2224925
           from [Arabidopsis thaliana]
          Length = 1260

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 186 NLIDMIRLKIRIYCHITPMN 127
           N I+ ++ KIR+YC I P+N
Sbjct: 880 NTIEDMKGKIRVYCRIRPLN 899


>At5g65930.1 68418.m08299 kinesin-like calmodulin-binding protein
           (ZWICHEL) identical to kinesin-like protein GI:2224925
           from [Arabidopsis thaliana]
          Length = 1259

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 186 NLIDMIRLKIRIYCHITPMN 127
           N I+ ++ KIR+YC I P+N
Sbjct: 879 NTIEDMKGKIRVYCRIRPLN 898


>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain; contains 2 predicted transmembrane domains
          Length = 988

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 46  DVELTISSGTIS*FPKEKNLIS*KISNIHRCNVT 147
           D+ +T  SG  S FP  +N+ S K   +  CN+T
Sbjct: 255 DLRITDLSGPESPFPPLRNMTSMKYLILRNCNLT 288


>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 519

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 181 NRYD-KIKNSNLLSHYTYEC*IFSKKLDFSL 92
           NR+D KI  +  L H  +EC +  +K+D++L
Sbjct: 180 NRHDHKISRTYHLGHGDWECGVCRQKMDWTL 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,700,684
Number of Sequences: 28952
Number of extensions: 116242
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)