Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0937
         (291 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   0.88 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   0.88 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   0.88 
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    19   8.2  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    19   8.2  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 0.88
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 160 RIPWNSNAQAEKKTLPGPLG 101
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 0.88
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 242 NFQGPQRVSGXRRKC 198
           NF GP R++   R+C
Sbjct: 601 NFHGPHRLAARSRRC 615



 Score = 21.0 bits (42), Expect = 2.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 114 PDLSAASSGHFGLPRRTLVFKDEG 43
           P +S++     G      VFKDEG
Sbjct: 2   PHVSSSGGDDLGSTDEVKVFKDEG 25


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 0.88
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 242 NFQGPQRVSGXRRKC 198
           NF GP R++   R+C
Sbjct: 493 NFHGPHRLAARSRRC 507


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 269 RHLHVIPHLNF 237
           +HLH  PH +F
Sbjct: 128 QHLHQFPHHDF 138


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 276 TGATSPRNPSPEFSRSAESIRXPPQMRCSSRSEPY 172
           + A SP  P+  +S ++ S    P M CS +   +
Sbjct: 17  SNAMSPMTPT--YSMNSMSCVSMPSMNCSPQGASF 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,580
Number of Sequences: 336
Number of extensions: 1354
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5109936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)