Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0937
(291 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 1.3
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 2.2
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 2.2
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 25 2.2
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc... 25 3.0
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 3.0
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 24 3.9
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 24 3.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 24 5.2
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 24 5.2
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 24 5.2
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 24 5.2
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 24 5.2
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 24 5.2
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 24 5.2
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 24 5.2
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 23 6.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 23 6.9
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 23 6.9
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 23 9.1
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 23 9.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 23 9.1
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 9.1
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 9.1
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 23 9.1
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 23 9.1
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 1.3
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -1
Query: 201 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 64
MR + E Y+ + G H T Q LF D + H L RRT
Sbjct: 1 MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 2.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 60 RVFDGVTQSGLKTPPRGPGRV 122
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 2.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 60 RVFDGVTQSGLKTPPRGPGRV 122
RVF G +SGLK +GP V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 2.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 149 PWNPIEGRYGSEREEHRICGGXRILSADLENSGEGLRGDVAP 274
P+ P+EG Y + ++ HRI R A LE G++ P
Sbjct: 3 PYEPVEGLYVNAKQYHRIL-KRREARAKLEERLRGVQTTKKP 43
>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 290
Score = 24.6 bits (51), Expect = 3.0
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Frame = -2
Query: 263 LHVIPHLNFQGPQRVSGXRRKCGALRVP---NHISLL*DSMELERSGRKENSSRTSRRRL 93
LH H+N Q R S + C +++P +LL D +++ + R
Sbjct: 140 LHGRSHINEQWSMR-SYVSKNCIQMKIPASNQRKTLLRDVLKIFDEPNLHIGLKAERMHH 198
Query: 92 QATLG--YPVEHSFLKTRERLLKRFR 21
+G Y + FLKT+E +L ++R
Sbjct: 199 FECIGNLYLIGPKFLKTKEAVLNQYR 224
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 3.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 165 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 64
++ GTR L+ K PD+ ++ G + L T
Sbjct: 8 NVNIQGTRVLKNKLGKIPDIDISTDGKYLLSAST 41
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 24.2 bits (50), Expect = 3.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 120 LFPDLSAASSGHFGLPRRT 64
LFP +S + G F +PRRT
Sbjct: 386 LFPSVSVENFGCFQVPRRT 404
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 24.2 bits (50), Expect = 3.9
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 206 RKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQATLGYPVEHSFLK 51
+K + +P HI LL + E + + +++ + SRRR L EH LK
Sbjct: 1037 QKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNL---YEHIVLK 1085
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.8 bits (49), Expect = 5.2
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -1
Query: 264 SPRNPSPEFSRSAESIRXPPQMRCSSRSEPYLP 166
SP P+P+ +A P RS PY P
Sbjct: 1531 SPAPPAPQHPSAAALSSAPADNSMPHRSSPYAP 1563
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 23.8 bits (49), Expect = 5.2
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 249 SPEFSRSAESIRXPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFP 112
SPE ++++ R P ++ S PS+ F TL R P
Sbjct: 166 SPESKQTSDGHRPPSPTSITTTSTSIDPSVAFSSKSTLATTRTNAP 211
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 23.8 bits (49), Expect = 5.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 101 RRLQATLGYPVEHSFLKTRERLLKR 27
RR+ +T+G PV+H E L+R
Sbjct: 87 RRVASTIGIPVDHRRRNRSEESLQR 111
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 23.8 bits (49), Expect = 5.2
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +3
Query: 144 EFHGIL*KGDMVRNAKST 197
E+HG+ +G +VRNA ++
Sbjct: 69 EYHGVQARGQLVRNADNS 86
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 23.8 bits (49), Expect = 5.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 132 QKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVPLPGS 10
Q +K FPD ++ SG + +F+D ++ P GS
Sbjct: 383 QIQKRFPDATSPFSGESMFREYSSIFEDYHQLLVNFPSEGS 423
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 23.8 bits (49), Expect = 5.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 2 PIPEPGSGTVSIIVPSSLKTSVRRGNPKWPE 94
P P +V++I+ + K S NPKWP+
Sbjct: 23 PNAPPRRASVAVII--AFKESQDFSNPKWPQ 51
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 23.8 bits (49), Expect = 5.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 110 SGKSFLFCLSVRVPWNPIEGRYGSERE 190
+G LFCLS+ WN +Y R+
Sbjct: 478 AGSLQLFCLSIIKRWNQTGQKYSDLRD 504
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 23.8 bits (49), Expect = 5.2
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = -1
Query: 225 ESIRXPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDE 46
ESI P+ E ++ F GTR L+ + F L +G + RT +
Sbjct: 317 ESIELRPEEAVIDVDELDKNAVLFGGTRVLQVTQSPFCKLKTPDNGVPAIVLRTGFETSQ 376
Query: 45 GTIIETV 25
G+++ T+
Sbjct: 377 GSLVRTM 383
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 23.4 bits (48), Expect = 6.9
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 5 IPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVR 145
+P P S S S L +S+ R +PK P D+ L SV+
Sbjct: 96 LPPPSSDPFS----SPLSSSLHRSSPKRPHDSLGEESPGKLLRTSVK 138
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.4 bits (48), Expect = 6.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 276 TGATSPRNPSPEFSRSAESIRXPPQMRCSSRSEP 175
+ ++ P P P S +A SI PPQ R + P
Sbjct: 332 SNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 23.4 bits (48), Expect = 6.9
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -2
Query: 266 HLHVIPHLN 240
H+H+IPHLN
Sbjct: 39 HIHLIPHLN 47
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 52 FKNECSTG*PKVAXXXXXXXXXXFSFL 132
+K +C TG P+VA FS+L
Sbjct: 536 YKVDCETGKPRVAFRETLSKKVPFSYL 562
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 23.0 bits (47), Expect = 9.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 138 LRQKRKLFPDLSAASSGHFGLPRRT 64
L Q KL D+ +ASS LPR T
Sbjct: 451 LSQDEKLQHDVRSASSAALNLPRDT 475
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 23.0 bits (47), Expect = 9.1
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 8 PEPGSGTVSIIVPSSLKTSVRRGNP-KWPEDAAERSGKSFLFCLSVRVPWNPIEG 169
P+P S T+ + + L+ S R P K E AE G+ L V ++G
Sbjct: 960 PDPSSLTIPVDQVAPLQLSANRWQPKKLTEKPAETKGEDEEALLPPEVVQRKVKG 1014
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 23.0 bits (47), Expect = 9.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 267 TSPRNPSPEFSRSAESIRXP 208
TSPR PSP S S R P
Sbjct: 279 TSPRLPSPPQSTRPSSTRFP 298
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 23.0 bits (47), Expect = 9.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 47 SSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNP 160
SS+ +S P P ++ SGK L LS+ +NP
Sbjct: 147 SSVSSSYDPSFPWGPRMSSVSSGKQHLSSLSLHTHFNP 184
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 23.0 bits (47), Expect = 9.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 20 SGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLF 130
SG+ + VPS + T + GN + A FLF
Sbjct: 232 SGSELLRVPSKVSTKTQDGNLTYYASACMSPDSKFLF 268
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 23.0 bits (47), Expect = 9.1
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 248 HLNFQGPQRVSGXRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 96
HL+ P R R+K L L DS E+ERS + N S +R
Sbjct: 23 HLDSCFPLRYIIGRKKASKLLCTMDSGLKSDSHEVERSNFQLNKPEKSLKR 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,264,320
Number of Sequences: 5004
Number of extensions: 23405
Number of successful extensions: 85
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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