Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0937
(291 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0350 + 2534422-2535615 31 0.21
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 31 0.21
03_05_1045 - 29914581-29914829,29914840-29916083,29919055-299191... 30 0.27
12_02_0407 - 18654134-18654172,18654913-18655803 30 0.36
03_05_0565 + 25667391-25667696 29 0.63
01_01_0012 + 71903-72935,73468-73981,74619-76008 29 0.83
03_02_0738 - 10824121-10825572 28 1.1
02_01_0302 - 2021221-2023305 28 1.4
05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664 27 2.5
04_04_0844 - 28637393-28638118,28638206-28638283,28638431-286386... 27 2.5
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 27 3.3
02_02_0590 - 11894721-11895188,11895684-11895851 27 3.3
12_02_0970 + 24939345-24939416,24940689-24941054 26 4.4
11_05_0087 + 18970741-18972702 26 4.4
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 26 4.4
03_02_0775 - 11096620-11097240 26 4.4
03_01_0563 + 4169144-4169516,4170362-4170648,4171339-4171576,417... 26 4.4
01_06_0456 + 29521282-29522064 26 4.4
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 26 5.8
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506... 26 5.8
11_04_0042 + 12696247-12696299,12696855-12696940,12697359-126974... 25 7.7
10_08_0919 + 21564245-21565699,21566876-21567022,21567170-215672... 25 7.7
09_02_0409 - 8656136-8656318,8656469-8656609,8658608-8658756,865... 25 7.7
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 25 7.7
01_05_0596 + 23511148-23512650 25 7.7
01_03_0258 + 14309549-14309926 25 7.7
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 154 PWNSNAQAEKKTLPGPLGGVFRP 86
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 30.7 bits (66), Expect = 0.21
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -1
Query: 252 PSPEFSRSA-ESIRXPPQM------RCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAAS 94
P P+ SRS ES R P S + + GFHG L+ KL PDL +
Sbjct: 168 PPPKRSRSKQESSRASPMKLIKLYPHMSGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWL 226
Query: 93 SGHFGLPRRTLVFKDEGTI 37
HF LVF G I
Sbjct: 227 MEHFNPATNQLVFPGRGAI 245
>03_05_1045 -
29914581-29914829,29914840-29916083,29919055-29919199,
29919727-29919792,29919882-29920108,29920204-29920310,
29920428-29920502,29920600-29920688,29920768-29920848,
29921631-29921702,29922056-29922178
Length = 825
Score = 30.3 bits (65), Expect = 0.27
Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = -1
Query: 267 TSPRNPSPEFSRSAESIR-XPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASS 91
TSP PSP F S S R P SS + P LP T L R PDLS +
Sbjct: 350 TSPSKPSPSFCHSLLSSRLLPSAAAASSPTAPTLPVQALLTTAGLLPPR--HPDLSLVAL 407
Query: 90 GHF 82
F
Sbjct: 408 NSF 410
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 29.9 bits (64), Expect = 0.36
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 11 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 175
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>03_05_0565 + 25667391-25667696
Length = 101
Score = 29.1 bits (62), Expect = 0.63
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 291 RIWLRTGATSPRNPSPEFSRSAESIRXPPQMRCSSRSEPYLPSIGFHGT 145
RI++ A PR+ SP +R A++ S+ +EP P HGT
Sbjct: 40 RIFMADAAHPPRHRSPPLARRADAASPRRSCSGSASAEPQAPVEEPHGT 88
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 28.7 bits (61), Expect = 0.83
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 258 RNPSPEFSRSAESIRXPPQMRCSSRSEPYLPSI 160
R+PSP RS R P + R S RS Y P +
Sbjct: 516 RSPSPSARRSKSRSRSPIKYRRSRRSRSYSPPV 548
>03_02_0738 - 10824121-10825572
Length = 483
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -1
Query: 267 TSPRNPSPEFSRSAESIRXPPQMRCSSRSEPYLPSIGFHG--TRTLRQKRKL 118
TSP PSP S PP SS P LP + H R+LR+ R+L
Sbjct: 76 TSPPPPSPPSSSPPPLSFPPPPPPPSSPPPPALPVVDDHSDTQRSLRRLRQL 127
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 273 GATSPRNPSPEFSRSAESIRXPPQMRCSSRSEPYLPS 163
G+T+P PSP S + S PPQ ++ S P PS
Sbjct: 488 GSTTPSYPSPPSSSTTPSYHSPPQGH-TTPSHPSPPS 523
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 273 GATSPRNPSPEFSRSAESIRXPPQMRCSSRSEPYLP 166
G T+P +PSP S +A PPQ + S P P
Sbjct: 512 GHTTPSHPSPPSSSTAPPSHSPPQSTPTHPSYPSPP 547
>05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664
Length = 248
Score = 27.1 bits (57), Expect = 2.5
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +2
Query: 14 PGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRYGS-ERE 190
PGSG V +IVP V G W R + F F + +E +GS E E
Sbjct: 21 PGSGGVQVIVPGG--GGVHPGG-DWRRTTKSRRNR-FRFSARPEIKVAALEEEHGSGEEE 76
Query: 191 EHRICGGXR 217
EH GG R
Sbjct: 77 EH---GGGR 82
>04_04_0844 -
28637393-28638118,28638206-28638283,28638431-28638607,
28639124-28639537
Length = 464
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 279 RTGATSPRNPSPEFSRSAESIRXPPQMRCSSRSEPYLPSI 160
R+ AT P +PS + + + +S+ PP + + P L ++
Sbjct: 301 RSYATMPESPSKDSTTAQQSVPSPPSVGMAEALSPLLMAV 340
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 26.6 bits (56), Expect = 3.3
Identities = 22/85 (25%), Positives = 37/85 (43%)
Frame = -1
Query: 270 ATSPRNPSPEFSRSAESIRXPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASS 91
+TS R P+P S + + R PP +R+ + F +Q+ ++ S
Sbjct: 23 STSARTPTPTPSTAGDPRRHPPPPGPGARNPAASSAAAFRPPPQPQQQPRV-ETPPPPSY 81
Query: 90 GHFGLPRRTLVFKDEGTIIETVPLP 16
G L RRT++ D G++ LP
Sbjct: 82 GFHNLDRRTMLLAD-GSVRTYFALP 105
>02_02_0590 - 11894721-11895188,11895684-11895851
Length = 211
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 38 IVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCL 136
++ S + V GN P +E+ G ++L CL
Sbjct: 70 VIQSPINLQVEHGNDLTPTSVSEKPGNNYLPCL 102
>12_02_0970 + 24939345-24939416,24940689-24941054
Length = 145
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 146 VPWNPIEGRYGSEREEHRICGGXRILSADLENSGEGLRGDV 268
V W P GR GS E GG + GEG G+V
Sbjct: 97 VSWIPASGRSGSGSAEKASGGGEEGVEGSGYGGGEGGGGEV 137
>11_05_0087 + 18970741-18972702
Length = 653
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 140 VRVPWNPIEGRYGSEREEHR 199
VR P P+ GR+G RE R
Sbjct: 56 VRAPRRPLHGRHGHHREHRR 75
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 270 ATSPRNPSPEFSRSAESIRXPPQMRCSSRSEP 175
A+ +P E SRSA R P + R SRS P
Sbjct: 232 ASRSHSPVKERSRSASQSRSPVKERSPSRSPP 263
>03_02_0775 - 11096620-11097240
Length = 206
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 185 REEHRICGGXRILSA-DLENSGEGLRGDVAPV 277
RE R GG + +A D + G G RG VAPV
Sbjct: 101 RERRRGGGGDAVAAAGDGDAGGSGSRGGVAPV 132
>03_01_0563 +
4169144-4169516,4170362-4170648,4171339-4171576,
4172473-4172796,4172914-4172999,4173124-4173231,
4173315-4173619,4173733-4173960,4174109-4174877
Length = 905
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 225 ESIRXPPQMRCSSRSEPYLPSIGFHGTRTLRQK 127
+S R P R ++PYLPS G R LR+K
Sbjct: 205 QSTRELPTKRVFFSNKPYLPSETPPGLRELREK 237
>01_06_0456 + 29521282-29522064
Length = 260
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 141 TLRQKRKLFPDLSAASSGHFGLPRRTL 61
TLR+ ++FP +S++ G FG+ R L
Sbjct: 171 TLRRHHQVFPHISSSCQGCFGVRRYIL 197
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = -1
Query: 276 TGATSPRNPSPEFSRSAESIRXPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAA 97
+ ++SP +PS S S+E P M C R+ P R ++ +++ D S+
Sbjct: 15 SASSSPSSPS---SSSSEDSSSPMSMPCKRRARPRTDKSTGKAKRPKKESKEVV-DPSSN 70
Query: 96 SSGHFGLPRRTLVFK 52
G G +R+ +++
Sbjct: 71 GGGGGGGGKRSSIYR 85
>04_04_0964 -
29749624-29749649,29749742-29749945,29750036-29750634,
29750742-29750826,29750914-29751562,29751568-29751643,
29753891-29753957,29754097-29754998,29756579-29756790
Length = 939
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 165 SIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDE 46
S G H L K+ L+AASSG LP VF ++
Sbjct: 22 SRGCHHVNVLPMSGKIMLPLTAASSGSVALPCDAPVFTEK 61
>11_04_0042 +
12696247-12696299,12696855-12696940,12697359-12697439,
12697525-12697650,12697752-12697972,12698348-12698440,
12698713-12698853
Length = 266
Score = 25.4 bits (53), Expect = 7.7
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 153 HGTRTLRQK-RKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVPLPGSGI 4
HGT+ L+ RKL + SA G G RRT F DE + + P G+
Sbjct: 122 HGTKRLKSSSRKLKVEFSAKLGGPCGDNRRT--FVDEVVMYTRLRTPLIGV 170
>10_08_0919 +
21564245-21565699,21566876-21567022,21567170-21567286,
21567580-21568176
Length = 771
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 117 FPDLSAASSGHFGLPRRTLVFKDEGTIIETVPLPGSG 7
F L+ + +GLP +L T++E P PG G
Sbjct: 287 FSPLAVQTCRAYGLPLLSLQSHANATLVEQPPAPGLG 323
>09_02_0409 -
8656136-8656318,8656469-8656609,8658608-8658756,
8658830-8658987,8659326-8659409,8659654-8659787,
8661255-8661389,8662159-8662551
Length = 458
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -3
Query: 205 ANAVLFAFRTISPFYRIPWNSNAQAEKKTLPGP 107
+ V F TIS +I W S KK+ P P
Sbjct: 264 SRGVAATFSTISSLSKIIWRSEPSPTKKSRPKP 296
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 56 LKTRERLLKRFRCRV 12
L RERLLK FRC +
Sbjct: 488 LSMRERLLKEFRCSI 502
>01_05_0596 + 23511148-23512650
Length = 500
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 17 GSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCL 136
G + V ++ + RG+ +P + R G+SF +CL
Sbjct: 259 GHDNEGLFVAAAGLLGLGRGSLSFPSQISRRFGRSFSYCL 298
>01_03_0258 + 14309549-14309926
Length = 125
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 107 RSGKSFLFCLSVRVPWNPIEGRYGSEREEHRICG 208
R G S++ + R P++ E RYG+ R+ + +CG
Sbjct: 42 RMGSSYVDDMRRRPPFS--EARYGAARKVYVVCG 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,948,319
Number of Sequences: 37544
Number of extensions: 180985
Number of successful extensions: 681
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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