Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0937
(291 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41893| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.023
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.49
SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 29 0.49
SB_12021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.49
SB_57686| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.1
SB_57695| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.5
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 27 2.0
SB_58033| Best HMM Match : HSA (HMM E-Value=3.2) 27 2.0
SB_52265| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_20905| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_13724| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.6
SB_8277| Best HMM Match : DUF827 (HMM E-Value=1.7) 27 2.6
SB_55215| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.0003) 27 2.6
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 27 2.6
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_18| Best HMM Match : OAR (HMM E-Value=0.92) 26 4.6
SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
SB_8778| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013) 26 6.1
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
SB_42222| Best HMM Match : ig (HMM E-Value=2.1e-17) 26 6.1
SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083) 26 6.1
SB_27396| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.1
SB_14500| Best HMM Match : Vicilin_N (HMM E-Value=5.3) 26 6.1
SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27) 26 6.1
SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33) 25 8.0
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.0
SB_17711| Best HMM Match : HECT (HMM E-Value=4.9) 25 8.0
>SB_41893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 33.9 bits (74), Expect = 0.023
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = -2
Query: 239 FQGPQRVSGXRRKCGALRVPNHISLL*DSMELERSG--RKENSSRTSRRRLQATLGYPV- 69
F+G + +G +KCGAL P+ L S S RKENSS+ R+RL+ L Y +
Sbjct: 15 FKGRRERTGHHKKCGAL--PSIKPYLQASRFQGESSLKRKENSSQGPRQRLRVRLRYRIC 72
Query: 68 -EHSFLKTRERLLKRF 24
E + + +L RF
Sbjct: 73 RERQYPRPGSGILTRF 88
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 29.5 bits (63), Expect = 0.49
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 282 LRTGATSPRNPSPEFSRSAESIRXPPQMRCSSRSEPYLPSIGFH-GTRTLRQK 127
+R+ + S R SPE + S E R PP MR S S PYL G H T+T Q+
Sbjct: 2221 IRSLSLSSRGTSPEPAVS-EVRRPPPPMRRRSSSLPYLLPGGPHISTQTSLQE 2272
>SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 538
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 290 GYGYEPARHLHVIPHLNFQGPQRVSGXRRKCGAL 189
GY Y+ R P NFQG + +G +KCGAL
Sbjct: 116 GYEYDRTRKSMSSP--NFQGRRERTGHHKKCGAL 147
>SB_12021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 290 GYGYEPARHLHVIPHLNFQGPQRVSGXRRKCGAL 189
GY Y+ R P NFQG + +G +KCGAL
Sbjct: 10 GYEYDRTRKSMSSP--NFQGRRERTGHHKKCGAL 41
>SB_57686| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 290 GYGYEPARHLHVIPHLNFQGPQRVSGXRRKCGAL 189
GY Y+ R P FQGP R +KCGAL
Sbjct: 10 GYEYDRTRKSMSSP--KFQGPSRAHRTPQKCGAL 41
>SB_57695| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 290 GYGYEPARHLHVIPHLNFQGPQRVSGXRRKCGAL 189
GY Y+ R P NF+G + +G +KCGAL
Sbjct: 10 GYEYDRTRKSMSSP--NFKGRRERTGHHKKCGAL 41
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -1
Query: 258 RNPSPEFSRSAESIRXPPQMRCSSRSEPYLPSIGFHGTRTLRQKR 124
R+ SP+ SRSA R P + R RS S + +R+ R+ R
Sbjct: 235 RSRSPKKSRSARRSRSPQKSRSPQRSRSPRSSKRYRSSRSHRKHR 279
>SB_58033| Best HMM Match : HSA (HMM E-Value=3.2)
Length = 249
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 95 LQATLGYPVEHSFLKTRERLLKRFRCRVP 9
L TLGYP H+FL+ R R+L +R P
Sbjct: 41 LSGTLGYPALHTFLE-RFRVLDLYRSYSP 68
>SB_52265| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 131 RKENSSRTSRRRLQATLGYPV--EHSFLKTRERLLKRF 24
RKENSS+ R+RL+ L Y + E + + +L RF
Sbjct: 44 RKENSSQGPRQRLRVRLRYRICRERQYPRPGSGILTRF 81
>SB_50916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 9 RNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRGPGR 119
R P AEP + + P+L +R+ DG Q ++ PRG R
Sbjct: 200 RTPRAEPRE-ARPKLSERLDDGRDQKTMRLLPRGTPR 235
>SB_20905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 131 RKENSSRTSRRRLQATLGYPV--EHSFLKTRERLLKRF 24
RKENSS+ R+RL+ L Y + E + + +L RF
Sbjct: 26 RKENSSQGPRQRLRVRLRYRICRERQYPRPGSGILTRF 63
>SB_13724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 290 GYGYEPARHLHVIPHLNFQGPQRVSGXRRKCGAL 189
GY Y+ R +P + F+G + +G RKCGAL
Sbjct: 10 GYEYDRTRK-SCLPRI-FKGRRERTGHHRKCGAL 41
>SB_8277| Best HMM Match : DUF827 (HMM E-Value=1.7)
Length = 208
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 9 RNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRGPGR 119
R P AEP + + P+L +R+ DG Q ++ PRG R
Sbjct: 162 RTPRAEPRE-ARPKLSERLDDGRDQKKMRLLPRGTPR 197
>SB_55215| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.0003)
Length = 458
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 9 RNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRGPGR 119
R P AEP + + P+L +R+ DG Q ++ PRG R
Sbjct: 412 RTPRAEPRE-ARPKLSERLDDGRDQKKMRLLPRGTPR 447
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 22 RNRFNNRSLVFKNECSTG 75
R+ NNRS+VF EC TG
Sbjct: 53 RSYHNNRSVVFLGECMTG 70
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 189 SRSEPYLPSIGFHGTRTLRQKRKLFPDL 106
S P+ P G HG RT R + FP L
Sbjct: 1175 SLGHPHPPLAGLHGARTSRPEDHRFPTL 1202
>SB_18| Best HMM Match : OAR (HMM E-Value=0.92)
Length = 213
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -2
Query: 128 KENSSRTSRRRLQAT-LGYPVEHSFLKT 48
K + + +SRRR Q GYP++ SF +T
Sbjct: 4 KASDTCSSRRRSQLVYFGYPIQRSFFET 31
>SB_58603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 270 ATSPRNPSPEFSRSAESIRXPPQMRCSSRSEPYLP 166
A+S + + S SAE I+ PP M S P +P
Sbjct: 124 ASSSTSNASNTSSSAEGIKTPPPMPSMLHSPPLVP 158
>SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 161 IEGRYGSEREEHRICGGXRI 220
+EGRYG E + I GG RI
Sbjct: 30 LEGRYGKADEPYAIRGGSRI 49
>SB_8778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 290 GYGYEPARHLHVIPHLNFQGPQRVSGXRRKCGALRVPNH 174
GY Y+ R P NFQGP R ++ G +R +H
Sbjct: 10 GYEYDRTRKSMSSP--NFQGPSRAHRTPQETGRMRPYDH 46
>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
Length = 873
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 237 SRSAESIRXPPQMRCSSRSEPYLP 166
S SAE I PPQM+ S P P
Sbjct: 472 SSSAEGINTPPQMQSMLYSPPIFP 495
>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1257
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = -1
Query: 108 LSAASSGHF----GLPRRTLVFKDEGTIIETVPLPGSGIG 1
++ +S+GH + R VFK++G++I+ V GSG G
Sbjct: 766 ITISSNGHVVVTDRINSRVQVFKEDGSLIKVVGSHGSGDG 805
>SB_42222| Best HMM Match : ig (HMM E-Value=2.1e-17)
Length = 364
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 158 DSMELERSGRKENSSRTSRRRLQATLGYPVEHSFLKT 48
DS+E+E RK N + +RR+ + G PV S L +
Sbjct: 253 DSIEIEGKERKSNVRKENRRQGKKIEGIPVITSKLSS 289
>SB_40594| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
Length = 440
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = -3
Query: 169 PFYRIPWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF 56
P + N N T GP+G F+P+ V + F
Sbjct: 212 PLFPAAQNVNGTVASSTSSGPVGADFKPITVEAGGSTF 249
>SB_27396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 290 GYGYEPARHLHVIPHLNFQGPQRVSGXRRKCGALRVPNH 174
GY Y+ R P NFQGP R ++ G +R +H
Sbjct: 10 GYEYDRTRKSMSSP--NFQGPSRAHRTPQETGRMRPYDH 46
>SB_14500| Best HMM Match : Vicilin_N (HMM E-Value=5.3)
Length = 237
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 290 GYGYEPARHLHVIPHLNFQGPQRVSGXRRKCGALRVPNH 174
GY Y+ R P NFQGP R ++ G +R +H
Sbjct: 72 GYEYDRTRKSMSSP--NFQGPSRAHRTPQETGRMRPYDH 108
>SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)
Length = 1019
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -1
Query: 279 RTGATSPRNPS-PEFSRSAESIRXPPQMRCSSRSEPYLP-SIGFHG 148
R T PS P + + I PP R S+RS PY GF G
Sbjct: 879 RQSRTEENRPSSPLYPNRQQRIVSPPSGRNSARSSPYAHYGTGFPG 924
>SB_50893| Best HMM Match : SH3_1 (HMM E-Value=2e-33)
Length = 665
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 261 PRNPSPEFSRSAESIRXPPQMRCSSRSEPYL 169
P PSP ++ + ++R SSR EP L
Sbjct: 539 PSRPSPPLTKKTNAAGSQEELRKSSREEPPL 569
>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2630
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 118 LPGPLGGVFRPLWVTPSNT 62
LP + G+F WV+PSNT
Sbjct: 2598 LPNKIIGLFSWCWVSPSNT 2616
>SB_17711| Best HMM Match : HECT (HMM E-Value=4.9)
Length = 310
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +2
Query: 47 SSLKTSV---RRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIE 166
++L+TSV R +P W + + + +SFL RV +N E
Sbjct: 2 TTLRTSVGTQRMSSPPWSKSIVKTTPRSFLASRQQRVVYNGFE 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,892,737
Number of Sequences: 59808
Number of extensions: 189218
Number of successful extensions: 1336
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 328507322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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