Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0937
(291 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18190.1 68418.m02135 protein kinase family protein contains ... 31 0.13
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 0.71
At5g42370.1 68418.m05159 expressed protein 29 0.71
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 0.71
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 0.94
At5g22390.1 68418.m02612 expressed protein 27 1.6
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 27 2.2
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 2.2
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 27 2.9
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 26 3.8
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 26 3.8
At2g05210.1 68415.m00549 expressed protein 26 3.8
At1g60230.1 68414.m06783 radical SAM domain-containing protein ... 26 3.8
At3g60510.1 68416.m06768 enoyl-CoA hydratase/isomerase family pr... 26 5.0
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t... 26 5.0
At2g20750.1 68415.m02439 beta-expansin, putative (EXPB1) identic... 26 5.0
At1g67560.1 68414.m07697 lipoxygenase family protein similar to ... 26 5.0
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro... 25 6.6
At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase fa... 25 6.6
At3g55810.1 68416.m06201 pyruvate kinase, putative similar to py... 25 6.6
At3g19190.1 68416.m02436 expressed protein 25 6.6
At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar ... 25 6.6
At5g54180.1 68418.m06746 mitochondrial transcription termination... 25 8.8
At5g25580.1 68418.m03044 expressed protein 25 8.8
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 25 8.8
At1g27100.1 68414.m03303 expressed protein contains Pfam profil... 25 8.8
At1g17420.1 68414.m02128 lipoxygenase, putative similar to lipox... 25 8.8
At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase fa... 25 8.8
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 25 8.8
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 25 8.8
>At5g18190.1 68418.m02135 protein kinase family protein contains
Pfam domains, PF00069: Protein kinase domain
Length = 691
Score = 31.1 bits (67), Expect = 0.13
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 282 LRTGATSPRNPSPEFSRSAESIRXPPQ 202
LR+GA R PSP+ + A++I PPQ
Sbjct: 4 LRSGARRLRQPSPQVTGQADNIELPPQ 30
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 0.71
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 230 PQRVSGXRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 96
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 0.71
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 169 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 59
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 0.71
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 32 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 163
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 0.94
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 225 ESIRXPPQMRCSSRSEPYLPSIGFHGTRTLRQK 127
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 104 ERSGKSFLFCLSVRVPWNPIEG 169
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 152 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 33
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 152 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 33
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein similar to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 676
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 186 RSEPYLPSIGFHGTRTLRQKRK 121
R+ PY+P + F G RTL+ +R+
Sbjct: 288 RTFPYVPDMKFSGNRTLKLERQ 309
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 210 PPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHF 82
PP R SS + S F T+++ Q++ FP + AA HF
Sbjct: 17 PPSNRLSSFVS--ISSSSFGRTQSIAQRKARFPKIYAAKQLHF 57
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 23 GTVSIIVPSSLKTSVRRGNPKWPEDA 100
G ++VP +++ +R G KW E+A
Sbjct: 81 GEKEVVVPKAIQLHLRHGWKKWQEEA 106
>At2g05210.1 68415.m00549 expressed protein
Length = 364
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -1
Query: 195 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 70
C+ +E Y +GF T TLR+KR L S +F PR
Sbjct: 292 CNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330
>At1g60230.1 68414.m06783 radical SAM domain-containing protein
contains Pfam profile PF04055: radical SAM domain
protein
Length = 458
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 117 FPDLSAASSGHFGLPRRTLVFKDEGTIIETVPLP 16
F D+ +AS G R+ L D+G +IETV +P
Sbjct: 161 FKDIRSASDG----TRKILFTLDDGLVIETVVIP 190
>At3g60510.1 68416.m06768 enoyl-CoA hydratase/isomerase family
protein similar to enoyl-CoA-hydratase, Avicennia
marina, EMBL:AF190450 [GI:6014701], CoA-thioester
hydrolase CHY1 from Arabidopsis thaliana [GI:8572760];
contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 401
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 158 DSMELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRE-RLLKRFRCRVPE 6
DS+E+E S RK+ T+ RRL+ + ++ + RE RL +C + E
Sbjct: 280 DSLEIEASRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIRE 331
>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
Length = 257
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = -3
Query: 196 VLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF*RRGNDY*NGSAA 17
+L + + Y P +S AQ +K G G F WV + +R D NG
Sbjct: 69 ILAQYGELGRIYLAPEDSEAQVHRKRAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQI 128
Query: 16 GFRNR 2
G + +
Sbjct: 129 GGKKK 133
>At2g20750.1 68415.m02439 beta-expansin, putative (EXPB1) identical
to beta-expansin [Arabidopsis thaliana]
gi|2224913|gb|AAB61709; similar to SP:O04701 major
pollen allergen, Bermuda grass [Cynodon dactylon];
beta-expansin gene family, PMID:11641069
Length = 271
Score = 25.8 bits (54), Expect = 5.0
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = -1
Query: 279 RTGATSP-RNPSPEFSRSAESIRXPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLS 103
R GA SP E + +R + CS R+ + + + + K F DLS
Sbjct: 75 RVGAVSPILFKGGEGCGACYKVRCLDKTICSKRAVTIIATDQSPSGPSAKAKHTHF-DLS 133
Query: 102 AASSGHFGLPRRTLVFKDEGTI 37
A+ GH +P V ++ G +
Sbjct: 134 GAAFGHMAIPGHNGVIRNRGLL 155
>At1g67560.1 68414.m07697 lipoxygenase family protein similar to
13-lipoxygenase GB:CAA65269 [Solanum tuberosum],
gi:1654140 [Lycopersicon esculentum]
Length = 917
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 207 PQMRCSSRSEPYLPSIGFHGTRTLRQK 127
PQ R RS+P LPS G + LR+K
Sbjct: 209 PQARIIFRSQPCLPSETPDGIKELREK 235
>At5g07770.1 68418.m00889 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 722
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 282 LRTGATSPRNPSPEFSRSAESIRXPPQMRCSSRSEP 175
+R G+ SP P P S A PP M +SR+ P
Sbjct: 633 VRVGSPSP--PPPSMSGGAPPPPPPPPMLVASRTAP 666
>At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|P95649 CbbY protein
{Rhodobacter sphaeroides}
Length = 316
Score = 25.4 bits (53), Expect = 6.6
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 162 IGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT---LVFKDEGTIIET 28
IGF +TLR K + S SS LP R+ L+F +G I+E+
Sbjct: 30 IGFPRFQTLRFKSRSVYSKSRVSSPVSALPLRSLEALIFDCDGVILES 77
>At3g55810.1 68416.m06201 pyruvate kinase, putative similar to
pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
SWISS-PROT:Q42954
Length = 492
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -2
Query: 152 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLLK 30
ME+ GR N + S+ ++ TLG PV S ++ E+LLK
Sbjct: 1 MEMLLGGRATNGALRSKTKIVCTLG-PVSRS-VEMIEKLLK 39
>At3g19190.1 68416.m02436 expressed protein
Length = 1861
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 5 IPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAER 109
+P+ G + + P +T +RRGN W +DA+ R
Sbjct: 1361 VPQEGDSSGRELFP---ETDLRRGNSGWYDDASLR 1392
>At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar to
cinnamoyl-CoA reductase GB:CAA56103 [Eucalyptus gunnii],
Pinus taeda [GI:17978649]; contains non-consensus GG
acceptor splice site at exon 4
Length = 317
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 35 IIVPSSLKTSVRRGNPKWPEDAAE 106
++V SS+ V NPKWP+D A+
Sbjct: 116 VVVVSSIAAVVY--NPKWPQDVAK 137
>At5g54180.1 68418.m06746 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 500
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 137 SGRKENSSRTSRRRLQATLGYPVEH 63
SG + ++ T RRL A L Y VEH
Sbjct: 261 SGEDDFATGTVLRRLPAILSYSVEH 285
>At5g25580.1 68418.m03044 expressed protein
Length = 405
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 161 IEGRYGSEREEHRICGGXRILSADLEN 241
+ G ++EE R+C ILS+D +N
Sbjct: 11 VTGEPEQKKEEERLCEDLTILSSDSDN 37
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 206 GGXRILSADLENSGEGLRGDVAPVRNH 286
GG ++ S + ++S +R DV+P R H
Sbjct: 12 GGLKVESGEQKSSWPTMRFDVSPYRTH 38
>At1g27100.1 68414.m03303 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 519
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/40 (25%), Positives = 17/40 (42%)
Frame = +3
Query: 9 RNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRGPGRVFF 128
R P + P PR + D +++PP+ GR +
Sbjct: 400 RRPTSSPLSAESPRTSSSLSDRSDSDSVESPPKSDGRTIY 439
>At1g17420.1 68414.m02128 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum]
Length = 919
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 225 ESIRXPPQMRCSSRSEPYLPSIGFHGTRTLRQK 127
+S + P R ++PYLP+ G R LR+K
Sbjct: 209 QSQKDHPDKRIFFTNQPYLPNETPSGLRVLREK 241
>At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase
family protein simlar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 585
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 163 YRIPWNSNAQAEKKTLPGPLGGVFRPLWV 77
YRIPWNS+ + GVF +WV
Sbjct: 308 YRIPWNSSQYC--LVASKQMVGVFLTIWV 334
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 267 TSPRNPSPEFSRSA---ESIRXPPQMRCSSRSEPYLPSIGFHGTRT 139
+S R+P+ SRS R P R SRS LPS+ G+++
Sbjct: 240 SSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKS 285
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 267 TSPRNPSPEFSRSA---ESIRXPPQMRCSSRSEPYLPSIGFHGTRT 139
+S R+P+ SRS R P R SRS LPS+ G+++
Sbjct: 240 SSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKS 285
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,889,818
Number of Sequences: 28952
Number of extensions: 134633
Number of successful extensions: 433
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 271967544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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