Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0933
         (494 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   2.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   2.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   2.6  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   8.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 386 LSGFDFHGHRPAVMSDHAS 442
           L  FDFH  R  V   HA+
Sbjct: 362 LQAFDFHREREPVADHHAN 380


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 371 SRCTLLSGFDFHGHRPAVMSDHASHGVP 454
           S  +L  G + HG  P+VM  H +   P
Sbjct: 226 SASSLPPGNNIHGMAPSVMYPHLNRSSP 253


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 371 SRCTLLSGFDFHGHRPAVMSDHASHGVP 454
           S  +L  G + HG  P+VM  H +   P
Sbjct: 174 SASSLPPGNNIHGMAPSVMYPHLNRSSP 201


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 371 SRCTLLSGFDFHGHRPAVMSDHASHGVP 454
           S  +L  G + HG  P+VM  H +   P
Sbjct: 357 SASSLPPGNNIHGMAPSVMYPHLNRSSP 384


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 151 PRWSICY 171
           PRW ICY
Sbjct: 38  PRWYICY 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,803
Number of Sequences: 336
Number of extensions: 2290
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11630247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)