Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0933
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    27   1.6  
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    26   3.6  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   8.3  

>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 117 TRNPSPRQSSRASLEYLLLPPXSAPTEAPSGLTPRP 224
           ++NP  R +SR+       PP SAP++  S +   P
Sbjct: 191 SKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNILDDP 226


>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 490 TKRSVKAPKKRSWDTMRGVVAHDSRTVAMEVE 395
           TK + K  ++R WD   GV+       A+E E
Sbjct: 200 TKETEKLAEERGWDIRDGVIYFPKEANALETE 231


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 394 IRLPWPPSCCHERPRLSWCP 453
           +R P+PPS    RP   W P
Sbjct: 695 VRPPYPPSSKDIRPEAPWLP 714


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,940,981
Number of Sequences: 5004
Number of extensions: 37056
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)