Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0933
(494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0610 - 7997406-7998047,7998379-7998426,8000719-8001143,800... 32 0.22
03_01_0343 - 2699518-2700114 28 3.6
12_02_0818 - 23427625-23429022 27 6.3
05_01_0304 - 2392526-2392828 27 6.3
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 27 6.3
01_06_0956 - 33343503-33344086,33344225-33344384 27 6.3
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 27 8.3
07_01_0342 - 2480030-2480402,2480990-2481108 27 8.3
04_04_1575 + 34548774-34549109,34549979-34550185 27 8.3
03_05_0997 + 29565311-29565664,29566134-29566298,29566572-295666... 27 8.3
01_06_1377 + 36764461-36765339 27 8.3
01_06_0971 - 33483015-33483071,33483282-33483315,33483590-334836... 27 8.3
>04_01_0610 -
7997406-7998047,7998379-7998426,8000719-8001143,
8002301-8002589
Length = 467
Score = 32.3 bits (70), Expect = 0.22
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 99 REXLLFTRNPSPRQSSRASLEYLLLPPXSAP--TEAPSGLTPRPFCALRRARP 251
+E + F +NP SR L LLLPP P +AP PRP+C RP
Sbjct: 369 QEVVDFLKNPD----SRRLLLLLLLPPPGPPPLAQAPPRHPPRPWCRPHTPRP 417
>03_01_0343 - 2699518-2700114
Length = 198
Score = 28.3 bits (60), Expect = 3.6
Identities = 20/72 (27%), Positives = 26/72 (36%)
Frame = +3
Query: 45 VHTPHRHKISP*A*DRLTREXLLFTRNPSPRQSSRASLEYLLLPPXSAPTEAPSGLTPRP 224
+H HRH+ P T + +R+ + LEY PP AP S
Sbjct: 49 IHRRHRHRAMPSRRPTATGTTSMVSRDDVDCYNQHRYLEYSPPPPTPAPPPVTSPPMSSS 108
Query: 225 FCALRRARPTVT 260
F A A T T
Sbjct: 109 FAATSYAGGTAT 120
>12_02_0818 - 23427625-23429022
Length = 465
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +1
Query: 139 SPPGPRWSICYYHXDLHRR-----RLQAGSRPDPSALSVAHVLLLRLN 267
+PP P + +C+ +H R +LQ R P+A + LLLR N
Sbjct: 220 TPPPPSYPVCHVRTAIHSRGNLFWKLQL--RRSPAAAAAGSFLLLRFN 265
>05_01_0304 - 2392526-2392828
Length = 100
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 101 RATTVHAKPFSTSVLQGLAG 160
RATTV A+P +T+V G AG
Sbjct: 40 RATTVKARPATTAVAAGFAG 59
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 123 NPSPRQSSRASLEYLLLPPXSAPTEAP 203
NP+P S+ + L PP +AP AP
Sbjct: 9 NPNPNPSTPFEVSMLFKPPSNAPAAAP 35
>01_06_0956 - 33343503-33344086,33344225-33344384
Length = 247
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 126 PSPRQSSRASLEYLLLPPXSAPTEAPSGLTPRPFCALRR 242
PSPR R + + LPP AP +P+ P P RR
Sbjct: 135 PSPRHKRRTAPAPMPLPPAQAPVWSPA---PAPAATQRR 170
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/32 (56%), Positives = 18/32 (56%)
Frame = +1
Query: 343 FSGLVASAGESLHTP*RIRLPWPPSCCHERPR 438
FS LVAS G SL P R P PP HER R
Sbjct: 56 FSRLVAS-GASLLLPSVFRKPPPPQPEHERER 86
>07_01_0342 - 2480030-2480402,2480990-2481108
Length = 163
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 415 TVAMEVESAKECATTHLPKQPALKMDGAEAFCLYTTVTGTC 293
T A + +++ CA + +LKMDG+ AF + + T C
Sbjct: 71 TAAGLLSTSRVCAVSDAIPAASLKMDGSGAFGVLSMATRAC 111
>04_04_1575 + 34548774-34549109,34549979-34550185
Length = 180
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 183 SAPTEAPSGLTPRPFCALRRAR 248
SAP+ SGL P PF + R AR
Sbjct: 3 SAPSTTASGLAPPPFSSARGAR 24
>03_05_0997 +
29565311-29565664,29566134-29566298,29566572-29566661,
29566763-29566891,29568141-29568272,29568904-29568969,
29569326-29569505,29569664-29569693,29569744-29569839,
29569959-29570096,29571060-29571142,29571447-29571484,
29571568-29571788,29572491-29572538
Length = 589
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 466 KKRSWDTMRGVVAHDSRTVAMEVESAKECATTHLPKQPALKMDGAE 329
K+R T + V HD TVA E + T H ++ A +G E
Sbjct: 5 KQRKAATEQEVENHDEATVAAEAGPENDGHTAHAAEEAAAAEEGVE 50
>01_06_1377 + 36764461-36765339
Length = 292
Score = 27.1 bits (57), Expect = 8.3
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 12 HKLALITSLPFVHTPHRHKISP*A*D-RLTREXLLFTRNPSPRQSSRASLEYLLLPPXSA 188
H +L+ SL H+ P R LLF+ NP+P S AS L+ P
Sbjct: 78 HDPSLLLSLDVFHSKPSDSPKPLVGSARSPLRDLLFSTNPNPSPDSPASA--LITLPLLR 135
Query: 189 PTEAPSGLTPRPFCALRRARP 251
P+ P G R ALR P
Sbjct: 136 PSGRPQGKL-RIRLALRERSP 155
>01_06_0971 -
33483015-33483071,33483282-33483315,33483590-33483684,
33483769-33483843,33483925-33484010,33484256-33484307,
33484381-33484455,33484554-33484620,33485699-33486159
Length = 333
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 111 LFTRNPSPRQSSRASLEYLLLPPXSAPTEAPSGLTPRPFCA 233
L R+P+P + R+ L S+PT A P PF A
Sbjct: 10 LLRRSPTPIPNPRSLLSLDAFLAASSPTAASHATAPAPFAA 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,307,072
Number of Sequences: 37544
Number of extensions: 320305
Number of successful extensions: 919
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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