Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0933
         (494 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043433-1|AAC05656.1|  231|Anopheles gambiae putative pupal-spe...    24   2.5  
AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein prot...    23   4.3  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    22   10.0 

>AF043433-1|AAC05656.1|  231|Anopheles gambiae putative
           pupal-specific cuticular proteinprotein.
          Length = 231

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 172 YHXDLHRRRLQAGSRPDPSALSVA 243
           YH D H     A  RP+PSA+ +A
Sbjct: 128 YHAD-HHTGFNAVVRPEPSAVKIA 150


>AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein
           protein.
          Length = 385

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +3

Query: 297 VPVTVVYRQNASAPSIFRAGCFGR*VVAHSLADSTSMATV-----LLS*ATTPLMVSHER 461
           +P+ V+ ++N +AP+ + A C  R    H+  +  ++A +       + AT P+     R
Sbjct: 36  IPLEVLEQENGTAPADWSASCTQRRTEDHAKIEQ-AVAVIKDHLEKQAAATKPIRDELRR 94

Query: 462 FXGAL 476
           F G L
Sbjct: 95  FGGTL 99


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -2

Query: 466 KKRSWDTMRGVVAHDSRTVAMEVESAKECATTHLPKQPALK 344
           KK +   +   +A    ++  E ++  +  T H  KQ ALK
Sbjct: 826 KKDAMGAVEAEIARIQASIDKEQQARHDLQTNHKVKQQALK 866


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,880
Number of Sequences: 2352
Number of extensions: 9992
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43977336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)