Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0933
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p...    27   5.7  
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p...    27   5.7  
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AY390540-1|AAQ94952.1|  405|Caenorhabditis elegans SMA-9 class I...    27   5.7  
AY390539-1|AAQ94951.1|  465|Caenorhabditis elegans SMA-9 class I...    27   5.7  
AY390538-1|AAQ94950.1|  591|Caenorhabditis elegans SMA-9 class I...    27   5.7  
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p...    27   9.9  
AY390541-1|AAQ94953.1|  521|Caenorhabditis elegans SMA-9 class I...    27   9.9  

>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
            protein T05A10.1a protein.
          Length = 2066

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = +3

Query: 168  LLPPXSAPTEAPSGLTPRPFCALRRARPTVTA**YQIKNLASHVPVTVVYRQNASAPS 341
            ++P  S P   P  LTP    AL  A+  VTA      + A   PV VV   + SA S
Sbjct: 1699 VVPTTSIPAPQPVALTPEMIRALANAQTPVTASMTNTPSTA-QFPVGVVSTPSVSAVS 1755


>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
            protein T05A10.1d protein.
          Length = 2134

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = +3

Query: 168  LLPPXSAPTEAPSGLTPRPFCALRRARPTVTA**YQIKNLASHVPVTVVYRQNASAPS 341
            ++P  S P   P  LTP    AL  A+  VTA      + A   PV VV   + SA S
Sbjct: 1767 VVPTTSIPAPQPVALTPEMIRALANAQTPVTASMTNTPSTA-QFPVGVVSTPSVSAVS 1823


>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical protein
            T05A10.1c protein.
          Length = 1692

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = +3

Query: 168  LLPPXSAPTEAPSGLTPRPFCALRRARPTVTA**YQIKNLASHVPVTVVYRQNASAPS 341
            ++P  S P   P  LTP    AL  A+  VTA      + A   PV VV   + SA S
Sbjct: 1325 VVPTTSIPAPQPVALTPEMIRALANAQTPVTASMTNTPSTA-QFPVGVVSTPSVSAVS 1381


>AY390540-1|AAQ94952.1|  405|Caenorhabditis elegans SMA-9 class Ia
           protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = +3

Query: 168 LLPPXSAPTEAPSGLTPRPFCALRRARPTVTA**YQIKNLASHVPVTVVYRQNASAPS 341
           ++P  S P   P  LTP    AL  A+  VTA      + A   PV VV   + SA S
Sbjct: 38  VVPTTSIPAPQPVALTPEMIRALANAQTPVTASMTNTPSTA-QFPVGVVSTPSVSAVS 94


>AY390539-1|AAQ94951.1|  465|Caenorhabditis elegans SMA-9 class Ia
           protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = +3

Query: 168 LLPPXSAPTEAPSGLTPRPFCALRRARPTVTA**YQIKNLASHVPVTVVYRQNASAPS 341
           ++P  S P   P  LTP    AL  A+  VTA      + A   PV VV   + SA S
Sbjct: 98  VVPTTSIPAPQPVALTPEMIRALANAQTPVTASMTNTPSTA-QFPVGVVSTPSVSAVS 154


>AY390538-1|AAQ94950.1|  591|Caenorhabditis elegans SMA-9 class Ia
           protein.
          Length = 591

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = +3

Query: 168 LLPPXSAPTEAPSGLTPRPFCALRRARPTVTA**YQIKNLASHVPVTVVYRQNASAPS 341
           ++P  S P   P  LTP    AL  A+  VTA      + A   PV VV   + SA S
Sbjct: 224 VVPTTSIPAPQPVALTPEMIRALANAQTPVTASMTNTPSTA-QFPVGVVSTPSVSAVS 280


>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
            protein T05A10.1e protein.
          Length = 2101

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 22/60 (36%), Positives = 27/60 (45%)
 Frame = +3

Query: 168  LLPPXSAPTEAPSGLTPRPFCALRRARPTVTA**YQIKNLASHVPVTVVYRQNASAPSIF 347
            ++P  S P   P  LTP    AL  A+  VTA      + A   PV VV     S PS+F
Sbjct: 1767 VVPTTSIPAPQPVALTPEMIRALANAQTPVTASMTNTPSTA-QFPVGVV-----STPSVF 1820


>AY390541-1|AAQ94953.1|  521|Caenorhabditis elegans SMA-9 class Ib
           protein.
          Length = 521

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 22/60 (36%), Positives = 27/60 (45%)
 Frame = +3

Query: 168 LLPPXSAPTEAPSGLTPRPFCALRRARPTVTA**YQIKNLASHVPVTVVYRQNASAPSIF 347
           ++P  S P   P  LTP    AL  A+  VTA      + A   PV VV     S PS+F
Sbjct: 187 VVPTTSIPAPQPVALTPEMIRALANAQTPVTASMTNTPSTA-QFPVGVV-----STPSVF 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,052,156
Number of Sequences: 27780
Number of extensions: 223166
Number of successful extensions: 561
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)