Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0933
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.77 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 0.77
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 380 CNDSPAEATSPENGW 336
           C D P E   PE+GW
Sbjct: 642 CRDIPEEFLRPESGW 656


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 331 QRHPFSGLVASAGESLHTP*RIRLPWPPSC 420
           +R   SG  +S  + LH     + P PP C
Sbjct: 539 RRRANSGSTSSGDDELHRASLSKTPQPPQC 568


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 321 AYTLPLPARVMLNF 280
           ++ +PLP RV+ NF
Sbjct: 222 SFCIPLPVRVLPNF 235


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 190 RRRLQAGSRPDPSALSVAHVLLLRLNDT 273
           +RR+Q+    DP+ +S+A   + R N T
Sbjct: 885 QRRIQSNGLNDPTTVSLAVDTVARSNVT 912


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,562
Number of Sequences: 438
Number of extensions: 2603
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)