Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0933
         (494 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    34   0.060
At3g18360.1 68416.m02335 VQ motif-containing protein contains PF...    28   4.0  
At1g48960.1 68414.m05487 universal stress protein (USP) family p...    27   5.3  
At1g67890.1 68414.m07752 protein kinase family protein contains ...    27   6.9  
At1g31250.1 68414.m03825 proline-rich family protein contains pr...    27   6.9  

>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 33.9 bits (74), Expect = 0.060
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +3

Query: 45  VHTPHRHKISP*A*DRLTREXLLFTRNPSPRQSSRASLEYLLLPPXSAPTEAPSGLTPRP 224
           VH P   K SP   D   +  + F R+P P Q     + +   P  S PT  P   TP P
Sbjct: 406 VHKPQPPKESPQPNDPYNQSPVKFRRSPPPPQQPHHHVVHSPPPASSPPTSPPVHSTPSP 465


>At3g18360.1 68416.m02335 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 285

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 39  PFVHTPHRHKISP*A*DRLTREXLLFTRNPSPRQSS-RASLEYLLLPPXSAPTEAPSGLT 215
           P+ H PH H   P          +L+T +PSP   + + + +  ++    +P+   S   
Sbjct: 10  PYHHHPHHHHHHPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKKPPSPSSFSSAAK 69

Query: 216 PR 221
           PR
Sbjct: 70  PR 71


>At1g48960.1 68414.m05487 universal stress protein (USP) family
           protein contains Pfam PF00582: universal stress protein
           family; similar to hypothetical protein GI:7770340 from
           [Arabidopsis thaliana]
          Length = 219

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 144 SRASLEYLLLPPXSAPTEAPSGLTPRPFCALRRARP 251
           S+  +  L +P    PT+ P  L P P   L R RP
Sbjct: 172 SQIEISGLQVPEIPTPTKVPYRLCPSPHAILWRTRP 207


>At1g67890.1 68414.m07752 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 765

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 441 EAWSLMTAGRWPWKSNPLRSVQRLTCRSNQP 349
           E W +     WPWK N    ++R    S  P
Sbjct: 378 EEWMVKKGLSWPWKGNEREGLERRNAHSVWP 408


>At1g31250.1 68414.m03825 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           similar to prolin rich protein GB:S44189 GI:433706 from
           [Zea mays]
          Length = 165

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 132 PRQSSRASLEYLLLPPXSAPTEAPSGLTPRPFCALRRARPT 254
           P  +  AS    L PP ++P+  P+G TP    +L    P+
Sbjct: 109 PAGTPNASPSVKLTPPYASPSVRPTGTTPNASPSLTPPNPS 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,673,282
Number of Sequences: 28952
Number of extensions: 220738
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)