Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0932
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc...    26   3.3  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   5.8  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   5.8  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.7  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   7.7  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   7.7  

>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 225 YVFSLTRLSN*SFFLKRYLSVFLTSLTSISSSPKTLDSVRLQRSDYVLTK*RGTVSVNLL 404
           Y+F L   S  +FF   + S+   S + I S+P  +   R+Q  ++   +   T+  N+L
Sbjct: 199 YIFKLKDYSQATFFQNFFTSIAGASASLIVSAPLDVIKTRIQNKNFDNPQSGFTILKNML 258


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 137  PDTVRDTFTYIPDRSRSNDLFRTLNPLKARNTSDAS 30
            P  + +T TY P RSRSN    +L P+ AR +   S
Sbjct: 1558 PTALPETQTYTPVRSRSN----SLRPMLARLSDSKS 1589


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -2

Query: 137 PDTVRDTFTYIPDRSRSNDLFRTLNPLKARNTSDASDSAVGYSD 6
           P T     T+   +  S + F   N  K+  TSD+S+++  + +
Sbjct: 101 PQTASSNKTFSKRKRSSENSFNNRNKAKSSETSDSSNTSQSFKE 144


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 194  LRALLIRSQFVCIFFN*TIELIVFFKK 274
            L +L ++   VC+ +N   +L++F KK
Sbjct: 1024 LISLTLKDSDVCVIYNFVDDLVIFLKK 1050


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -3

Query: 154 HPTLHNLTQCVTRSHTYRTDRDLTTCFEL*IRLKPETPQMHRTA 23
           HP+ HN +     S   +     T  F L   L P + Q H TA
Sbjct: 48  HPSTHNSSVAYVDSQDNKPPLVSTLHFSLAPSLSPSSAQSHNTA 91


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 4   ASLYPTALS---DASEVFRALSGFKVRNRSLDRDRSGMYVNVS 123
           AS+ P  +S   D ++VFR+L GFK      +RD S     +S
Sbjct: 102 ASVAPQRISSVIDYADVFRSLPGFKNIENGGNRDTSSRIEELS 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,551
Number of Sequences: 5004
Number of extensions: 39781
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)