Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0932
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-4|AAC16995.1|  532|Caenorhabditis elegans Hypothetical ...    29   1.7  
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    28   5.3  
U58746-1|AAB00621.2|  558|Caenorhabditis elegans Glutamate trans...    27   7.0  
Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U41105-9|AAL38967.1|  111|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF067211-4|AAC16995.1|  532|Caenorhabditis elegans Hypothetical
           protein B0205.9 protein.
          Length = 532

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
 Frame = -3

Query: 487 TIKLELQENLISWISN-GVC*INQKRLPYNRLTLTVPRHLVRT*SER*SLTESKVFGDDD 311
           T++L+ Q  ++ + SN G+  + +K     R   T   +   T ++R  +TE+++   DD
Sbjct: 206 TVQLDDQRRIVRYASNDGMIELEEKTSGVKRRRSTKSSN---TPTKRREITENELSDTDD 262

Query: 310 IEVNEVKKTDKYLFKKND*FD--SLV-KENTYKL 218
           +EV E+   D Y+ +++  FD   LV +E +Y L
Sbjct: 263 VEVMEI--VDGYVEQESASFDFEELVNREASYNL 294


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 374 MTWHSEC*SVIR*SFLIDLTYTV*NPRNKVF 466
           +TW SE  S+I   F ID+ YT   P NK++
Sbjct: 36  ITWKSEF-SLIYTRFAIDIVYTFFVPHNKIY 65


>U58746-1|AAB00621.2|  558|Caenorhabditis elegans Glutamate
           transporter family protein6 protein.
          Length = 558

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 201 HS*FEVNLYVFSLTRLSN*SFFLKRYLSVFLTSLTSISSSPKTLDSVRLQRSDYV 365
           H+   V L  F +TR +    F K  +   +T+  + S SPK +  + + ++DYV
Sbjct: 280 HTIITVPLMYFFITRENPLPIF-KGMIQAAVTAFGTASGSPKNIRKLTITKNDYV 333


>Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical
           protein E03G2.4 protein.
          Length = 333

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 101 DRSRSNDLFRTLNPLKARNTSDASDSAVGYSD 6
           D+S S  L+ T +P+ ARN   +S SA  Y +
Sbjct: 96  DKSASYGLWNTESPIPARNYESSSSSAPVYGN 127


>U41105-9|AAL38967.1|  111|Caenorhabditis elegans Hypothetical
           protein T02G5.14 protein.
          Length = 111

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 245 TIELIVFFKKIFVGFLDLINFNIVITENFRLR*TSALRL 361
           T ELI+ F   F  F+D+ NF  + ++N R    S L+L
Sbjct: 4   TCELILKFPMKFNLFIDVFNFEYLFSDNQRKYILSRLKL 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,426,359
Number of Sequences: 27780
Number of extensions: 216737
Number of successful extensions: 413
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)