Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0932
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot...    31   0.40 
At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot...    28   5.0  
At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containi...    27   6.5  

>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 620

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 322 GDDDIEVNEVKKTDKYLFKKND*FDSLVKENTYKLTSNQEC 200
           GDD+IE++    +   LF+  D FD  ++EN  K ++ + C
Sbjct: 317 GDDEIEIDINDLSHDALFQLRDLFDEFLRENQKKDSNGEPC 357


>At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 688

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 322 GDDDIEVNEVKKTDKYLFKKND*FDSLVKENTYKLTSNQEC 200
           GDD+IE++    +D  LF+  D  D  ++E   K +S + C
Sbjct: 327 GDDEIEIDINDLSDHALFQLRDLLDEHLREIQNKKSSVEPC 367


>At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 597

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +1

Query: 55  LSGFKVRNRSLDRDRSGMYVNVSRTVSGCGVSGEL----FWSFNSLIRIHFKS 201
           ++GFK  N  L     GMY+   + +  C V  ++     +S+N+++  + KS
Sbjct: 74  ITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKS 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,479,119
Number of Sequences: 28952
Number of extensions: 189109
Number of successful extensions: 427
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)