Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0852
         (254 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   2.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    19   6.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           19   6.3  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    19   8.4  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 2.1
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 2   TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 88
           T +SQ    F  H  ++P  T   Q   C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255



 Score = 21.0 bits (42), Expect = 2.1
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +1

Query: 22  TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 108
           T +SQ    F  H  ++P  T   Q   C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255



 Score = 21.0 bits (42), Expect = 2.1
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 42  TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 128
           T +SQ    F  H  ++P  T   Q   C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255



 Score = 21.0 bits (42), Expect = 2.1
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 62  TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 148
           T +SQ    F  H  ++P  T   Q   C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255



 Score = 21.0 bits (42), Expect = 2.1
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +1

Query: 82  TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 168
           T +SQ    F  H  ++P  T   Q   C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255



 Score = 21.0 bits (42), Expect = 2.1
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 102 TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 188
           T +SQ    F  H  ++P  T   Q   C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255



 Score = 21.0 bits (42), Expect = 2.1
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 122 TMFSQSRRCFPSHDDVFPVTTMFSQSRRC 208
           T +SQ    F  H  ++P  T   Q   C
Sbjct: 227 TQYSQYGSWFLPHQPIYPAVTATVQLSTC 255


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 19.4 bits (38), Expect = 6.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 192 PSHDDVFPVTAHV 230
           P H D+ P T H+
Sbjct: 366 PMHHDMLPETMHM 378


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 19.4 bits (38), Expect = 6.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 192 PSHDDVFPVTAHV 230
           P H D+ P T H+
Sbjct: 366 PMHHDMLPETMHM 378


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 19.0 bits (37), Expect = 8.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 213 GKHRRDWENIVVTGKTS 163
           G +   WE+++   KTS
Sbjct: 99  GSNDNSWESLIEVTKTS 115



 Score = 19.0 bits (37), Expect = 8.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 193 GKHRRDWENIVVTGKTS 143
           G +   WE+++   KTS
Sbjct: 99  GSNDNSWESLIEVTKTS 115



 Score = 19.0 bits (37), Expect = 8.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 173 GKHRRDWENIVVTGKTS 123
           G +   WE+++   KTS
Sbjct: 99  GSNDNSWESLIEVTKTS 115



 Score = 19.0 bits (37), Expect = 8.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 153 GKHRRDWENIVVTGKTS 103
           G +   WE+++   KTS
Sbjct: 99  GSNDNSWESLIEVTKTS 115



 Score = 19.0 bits (37), Expect = 8.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 133 GKHRRDWENIVVTGKTS 83
           G +   WE+++   KTS
Sbjct: 99  GSNDNSWESLIEVTKTS 115



 Score = 19.0 bits (37), Expect = 8.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 113 GKHRRDWENIVVTGKTS 63
           G +   WE+++   KTS
Sbjct: 99  GSNDNSWESLIEVTKTS 115



 Score = 19.0 bits (37), Expect = 8.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 93  GKHRRDWENIVVTGKTS 43
           G +   WE+++   KTS
Sbjct: 99  GSNDNSWESLIEVTKTS 115



 Score = 19.0 bits (37), Expect = 8.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 73  GKHRRDWENIVVTGKTS 23
           G +   WE+++   KTS
Sbjct: 99  GSNDNSWESLIEVTKTS 115



 Score = 19.0 bits (37), Expect = 8.4
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 53  GKHRRDWENIVVTGKTS 3
           G +   WE+++   KTS
Sbjct: 99  GSNDNSWESLIEVTKTS 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,337
Number of Sequences: 336
Number of extensions: 1399
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 122,585
effective HSP length: 47
effective length of database: 106,793
effective search space used:  3951341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)