Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0852
(254 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 0.52
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 24 3.7
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 23 6.4
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 23 6.4
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 23 8.5
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 0.52
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 129 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV-TAHVFP 236
+PSHDD+F VT + F + + PV H+ P
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPVFFTHLVP 1470
Score = 25.8 bits (54), Expect = 0.91
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 9 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 98
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
Score = 25.8 bits (54), Expect = 0.91
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 29 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 118
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
Score = 25.8 bits (54), Expect = 0.91
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 49 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 138
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
Score = 25.8 bits (54), Expect = 0.91
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 69 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 158
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
Score = 25.8 bits (54), Expect = 0.91
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 89 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 178
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
Score = 25.8 bits (54), Expect = 0.91
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 109 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 198
+PSHDD+F VT + F + + PV
Sbjct: 1434 YPSHDDLFDVTQLTEVLELVFNVYSEKTPV 1463
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 23.8 bits (49), Expect = 3.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 198 HDDVFPVTAHVFPVT 242
HD +F H+FPVT
Sbjct: 464 HDFIFTTEGHLFPVT 478
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 23.0 bits (47), Expect = 6.4
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3
Query: 3 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 98
RC D + V T F S SH D P+
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPL 35
Score = 23.0 bits (47), Expect = 6.4
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 23 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 118
RC D + V T F S SH D P+
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPL 35
Score = 23.0 bits (47), Expect = 6.4
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +1
Query: 43 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 138
RC D + V T F S SH D P+
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPL 35
Score = 23.0 bits (47), Expect = 6.4
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3
Query: 63 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 158
RC D + V T F S SH D P+
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPL 35
Score = 23.0 bits (47), Expect = 6.4
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 83 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 178
RC D + V T F S SH D P+
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPL 35
Score = 23.0 bits (47), Expect = 6.4
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +1
Query: 103 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 198
RC D + V T F S SH D P+
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPL 35
Score = 23.0 bits (47), Expect = 6.4
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +3
Query: 123 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 218
RC D + V T F S SH D P+
Sbjct: 4 RCTQLQDTIDEVATQFYSSIHYLSSHHDFVPL 35
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 207 HRRDWENIVVTGKTSS*LGK 148
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 187 HRRDWENIVVTGKTSS*LGK 128
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 167 HRRDWENIVVTGKTSS*LGK 108
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 147 HRRDWENIVVTGKTSS*LGK 88
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 127 HRRDWENIVVTGKTSS*LGK 68
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 107 HRRDWENIVVTGKTSS*LGK 48
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 87 HRRDWENIVVTGKTSS*LGK 28
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
Score = 23.0 bits (47), Expect = 6.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 67 HRRDWENIVVTGKTSS*LGK 8
HRRD +VVTG T + G+
Sbjct: 359 HRRDGHYVVVTGITPTPFGE 378
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 22.6 bits (46), Expect = 8.5
Identities = 10/39 (25%), Positives = 19/39 (48%)
Frame = +3
Query: 129 FPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTAHVFPVTT 245
+PS D P + + + FP +V+ + + PVT+
Sbjct: 255 YPSKFDSIPFASASPKIKAAFPFDPNVYALNTNDGPVTS 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,245,951
Number of Sequences: 5004
Number of extensions: 22981
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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