Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0852
         (254 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783...    26   3.6  
08_02_0317 + 15705184-15705391,15706194-15706270,15706364-157064...    26   4.8  
04_04_0355 - 24643036-24643308,24644084-24644320,24645051-246453...    25   8.4  
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805...    25   8.4  

>05_04_0355 -
           20577189-20577275,20578001-20578129,20578252-20578371,
           20578505-20578741,20578983-20579258,20579375-20579508,
           20580006-20581632
          Length = 869

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 218 DWENIVVTGKTSS*LGKHRRDWENIVVT 135
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 198 DWENIVVTGKTSS*LGKHRRDWENIVVT 115
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 178 DWENIVVTGKTSS*LGKHRRDWENIVVT 95
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 158 DWENIVVTGKTSS*LGKHRRDWENIVVT 75
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 138 DWENIVVTGKTSS*LGKHRRDWENIVVT 55
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 118 DWENIVVTGKTSS*LGKHRRDWENIVVT 35
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417



 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 98  DWENIVVTGKTSS*LGKHRRDWENIVVT 15
           DW+N V+T   +S +G H   W   +V+
Sbjct: 390 DWKNEVLTKVDASLVGTHMEPWSATIVS 417


>08_02_0317 +
           15705184-15705391,15706194-15706270,15706364-15706406,
           15706507-15706564,15707576-15707645,15708409-15708876
          Length = 307

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +2

Query: 152 PSHDDVFPVTTMFSQSRRCFPSHGACFPSHD 244
           PSHDD  P     +    C P      P H+
Sbjct: 230 PSHDDALPCGEPLTPDSSCRPGSPTLSPKHE 260


>04_04_0355 -
           24643036-24643308,24644084-24644320,24645051-24645322,
           24647675-24647778,24648207-24648334
          Length = 337

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 227 MRRDWENIVVTGKTSS*LGKHRRDWENIV--VTGKTS 123
           + RD+   +VTGK +S L +   +W N    +T K S
Sbjct: 260 LARDYTRYLVTGKRTSRLKRAMLNWHNFCEGITNKDS 296


>03_06_0737 +
           35879723-35879990,35880105-35880201,35880464-35880591,
           35880686-35880767,35880855-35880918,35880930-35881022,
           35881120-35881178,35881391-35881826,35882050-35882120,
           35882201-35882351
          Length = 482

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 212 PSHGACFPSHD 244
           PSH  C PSHD
Sbjct: 358 PSHAICLPSHD 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,218,089
Number of Sequences: 37544
Number of extensions: 162817
Number of successful extensions: 475
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)