Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0852
(254 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK092650-1|BAC03936.1| 577|Homo sapiens protein ( Homo sapiens ... 31 0.89
X07024-1|CAA30073.1| 1554|Homo sapiens CCG1 protein protein. 30 1.2
D90359-1|BAA14374.1| 1872|Homo sapiens CCG1 protein protein. 30 1.2
AY623109-1|AAT38105.1| 1893|Homo sapiens TAF1 RNA polymerase II,... 30 1.2
AB209316-1|BAD92553.1| 1070|Homo sapiens TBP-associated factor 1... 30 1.2
>AK092650-1|BAC03936.1| 577|Homo sapiens protein ( Homo sapiens
cDNA FLJ35331 fis, clone PROST2014659. ).
Length = 577
Score = 30.7 bits (66), Expect = 0.89
Identities = 22/71 (30%), Positives = 26/71 (36%)
Frame = +3
Query: 3 RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSR 182
RC S D P+ M S RC + D P+ M S C S D + M S
Sbjct: 262 RCSSSPPDAPPLHEMLLVSARCSSAPRDAPPLHRMLLVSAGCSSSPPDAPRLRRMLLLSA 321
Query: 183 RCFPSHDDVFP 215
C S D P
Sbjct: 322 GCSSSPPDTTP 332
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +1
Query: 4 DVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHD 183
D P+ M S RC S D P+ M S RC + D P+ M S C S
Sbjct: 249 DAPPLHEMLLLSTRCSSSPPDAPPLHEMLLVSARCSSAPRDAPPLHRMLLVSAGCSSSPP 308
Query: 184 D 186
D
Sbjct: 309 D 309
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +3
Query: 24 DVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHD 203
D P+ M S RC S D P+ M S RC + D P+ M S C S
Sbjct: 249 DAPPLHEMLLLSTRCSSSPPDAPPLHEMLLVSARCSSAPRDAPPLHRMLLVSAGCSSSPP 308
Query: 204 D 206
D
Sbjct: 309 D 309
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 26/67 (38%)
Frame = +2
Query: 17 SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQ 196
+R S D P+ M S RC S D P+ M S RC + D P+ M
Sbjct: 240 ARHYSSSLPDAPPLHEMLLLSTRCSSSPPDAPPLHEMLLVSARCSSAPRDAPPLHRMLLV 299
Query: 197 SRRCFPS 217
S C S
Sbjct: 300 SAGCSSS 306
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/71 (30%), Positives = 26/71 (36%)
Frame = +2
Query: 5 MFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTT 184
M S RC S D P+ M S RC + D P+ M S C S D +
Sbjct: 256 MLLLSTRCSSSPPDAPPLHEMLLVSARCSSAPRDAPPLHRMLLVSAGCSSSPPDAPRLRR 315
Query: 185 MFSQSRRCFPS 217
M S C S
Sbjct: 316 MLLLSAGCSSS 326
>X07024-1|CAA30073.1| 1554|Homo sapiens CCG1 protein protein.
Length = 1554
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = -1
Query: 239 DWENMRRDWENIVVTGKTSS*LGKHRRDWEN------IVVTGKTSS*LGKHRRDWENIVV 78
D+E M ++ EN++ KTSS L + R + E ++ G +S G + RD + V
Sbjct: 1040 DFEEMGKNIENMLQNKKTSSQLSREREEQERKELQRMLLAAGSAAS--GNNHRDDDTASV 1097
Query: 77 TGKTSS*LGK 48
T SS G+
Sbjct: 1098 TSLNSSATGR 1107
>D90359-1|BAA14374.1| 1872|Homo sapiens CCG1 protein protein.
Length = 1872
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = -1
Query: 239 DWENMRRDWENIVVTGKTSS*LGKHRRDWEN------IVVTGKTSS*LGKHRRDWENIVV 78
D+E M ++ EN++ KTSS L + R + E ++ G +S G + RD + V
Sbjct: 1096 DFEEMGKNIENMLQNKKTSSQLSREREEQERKELQRMLLAAGSAAS--GNNHRDDDTASV 1153
Query: 77 TGKTSS*LGK 48
T SS G+
Sbjct: 1154 TSLNSSATGR 1163
>AY623109-1|AAT38105.1| 1893|Homo sapiens TAF1 RNA polymerase II, TATA
box binding protein (TBP)-associated factor, 250kD
protein.
Length = 1893
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = -1
Query: 239 DWENMRRDWENIVVTGKTSS*LGKHRRDWEN------IVVTGKTSS*LGKHRRDWENIVV 78
D+E M ++ EN++ KTSS L + R + E ++ G +S G + RD + V
Sbjct: 1117 DFEEMGKNIENMLQNKKTSSQLSREREEQERKELQRMLLAAGSAAS--GNNHRDDDTASV 1174
Query: 77 TGKTSS*LGK 48
T SS G+
Sbjct: 1175 TSLNSSATGR 1184
>AB209316-1|BAD92553.1| 1070|Homo sapiens TBP-associated factor 1
isoform 2 variant protein.
Length = 1070
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = -1
Query: 239 DWENMRRDWENIVVTGKTSS*LGKHRRDWEN------IVVTGKTSS*LGKHRRDWENIVV 78
D+E M ++ EN++ KTSS L + R + E ++ G +S G + RD + V
Sbjct: 260 DFEEMGKNIENMLQNKKTSSQLSREREEQERKELQRMLLAAGSAAS--GNNHRDDDTASV 317
Query: 77 TGKTSS*LGK 48
T SS G+
Sbjct: 318 TSLNSSATGR 327
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,135,519
Number of Sequences: 237096
Number of extensions: 745351
Number of successful extensions: 2084
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1996
length of database: 76,859,062
effective HSP length: 62
effective length of database: 62,159,110
effective search space used: 1367500420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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