Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0852
         (254 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023389-1|AAY55805.1|  220|Drosophila melanogaster IP01869p pro...    45   1e-05
AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA...    34   0.030
AY061603-1|AAL29151.1|  319|Drosophila melanogaster SD06362p pro...    26   8.0  
AE014298-2847|AAF48960.1|  323|Drosophila melanogaster CG12204-P...    26   8.0  

>BT023389-1|AAY55805.1|  220|Drosophila melanogaster IP01869p
           protein.
          Length = 220

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 26/72 (36%), Positives = 32/72 (44%)
 Frame = +3

Query: 39  TTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 218
           TTM    RRC   HDDV   TTM    RRC   HDDV       +  R   P+ + +  V
Sbjct: 31  TTMSRWPRRCHDGHDDVTMATTMSRWPRRCHDGHDDVTESCAKQTNFRLPSPNEEAIVDV 90

Query: 219 TAHVFPVTTMFS 254
           T     V T ++
Sbjct: 91  TVDQAMVGTCWA 102



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 24/61 (39%), Positives = 28/61 (45%)
 Frame = +1

Query: 19  TTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPV 198
           TTM    RRC   HDDV   TTM    RRC   HDDV       +  R   P+ + +  V
Sbjct: 31  TTMSRWPRRCHDGHDDVTMATTMSRWPRRCHDGHDDVTESCAKQTNFRLPSPNEEAIVDV 90

Query: 199 T 201
           T
Sbjct: 91  T 91



 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 23/60 (38%), Positives = 27/60 (45%)
 Frame = +2

Query: 2   TMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVT 181
           TM    RRC   HDDV   TTM    RRC   HDDV       +  R   P+ + +  VT
Sbjct: 32  TMSRWPRRCHDGHDDVTMATTMSRWPRRCHDGHDDVTESCAKQTNFRLPSPNEEAIVDVT 91


>AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA
            protein.
          Length = 2284

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
 Frame = +3

Query: 12   PSHDDVFPVTTMFSQSRRCFP-SHDDVFPVTTMFSQSRRCFPSHDD-------VFPVTTM 167
            P+     P+TT+ +    C+P S D   P   + +   RC+P   D         P TT+
Sbjct: 1257 PTPTSTRPITTITTSKPNCYPGSTDRRCPQIPVTTTKPRCYPGSTDPQCQPATYLPPTTV 1316

Query: 168  FSQSRRCFPSHDD--VFPVTAHVFPVTT 245
             +   RC+P  +D    P      P+TT
Sbjct: 1317 TTVRPRCYPGSNDPGCQPPQTTKTPITT 1344


>AY061603-1|AAL29151.1|  319|Drosophila melanogaster SD06362p
           protein.
          Length = 319

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 251 KHRRDWENMRRDW 213
           +  RDW N RRDW
Sbjct: 263 QEHRDWRNERRDW 275


>AE014298-2847|AAF48960.1|  323|Drosophila melanogaster CG12204-PA
           protein.
          Length = 323

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 251 KHRRDWENMRRDW 213
           +  RDW N RRDW
Sbjct: 267 QEHRDWRNERRDW 279


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,808,134
Number of Sequences: 53049
Number of extensions: 248761
Number of successful extensions: 514
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 24,988,368
effective HSP length: 64
effective length of database: 21,593,232
effective search space used: 431864640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)