Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0852
         (254 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z78410-4|CAB01643.1|  272|Caenorhabditis elegans Hypothetical pr...    26   4.3  
U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF016662-1|AAY55863.1|  196|Caenorhabditis elegans Hypothetical ...    25   9.8  
AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/71 (19%), Positives = 27/71 (38%)
 Frame = +3

Query: 3   RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSR 182
           R  P+H  +    +      R  P+H  + P  ++     R  P+H  +    ++     
Sbjct: 447 RSLPAHPLILLQPSQQQNQLRSLPAHPLILPRPSLPLNQLRSLPAHPLILLQPSLPQNQL 506

Query: 183 RCFPSHDDVFP 215
           R  P+H  + P
Sbjct: 507 RSQPAHPLILP 517



 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/71 (19%), Positives = 26/71 (36%)
 Frame = +2

Query: 23  RCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSR 202
           R  P+H  +    +      R  P+H  + P  ++     R  P+H  +    ++     
Sbjct: 447 RSLPAHPLILLQPSQQQNQLRSLPAHPLILPRPSLPLNQLRSLPAHPLILLQPSLPQNQL 506

Query: 203 RCFPSHGACFP 235
           R  P+H    P
Sbjct: 507 RSQPAHPLILP 517


>Z78410-4|CAB01643.1|  272|Caenorhabditis elegans Hypothetical
           protein C51E3.8 protein.
          Length = 272

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 141 DDVFPVTTMFSQSRRCFPSHDDVFPVTAHVFP 236
           +D+FP   +      C+P   DVF + +  FP
Sbjct: 75  EDLFPFANLGWGPSSCWPYSYDVFKIASRYFP 106


>U58734-5|AAB52504.3|  870|Caenorhabditis elegans Hypothetical
           protein T27A10.6 protein.
          Length = 870

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 203 RCFPSHGACFPSHDDVF 253
           RC P +  CFPSHD ++
Sbjct: 845 RC-PENADCFPSHDSLY 860


>AF016662-1|AAY55863.1|  196|Caenorhabditis elegans Hypothetical
           protein C33C12.11 protein.
          Length = 196

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 146 CFPSHDDVFPVTTMFSQSRRCFPSHGACFPSHDD 247
           CF + DD   +           PS G CF +HDD
Sbjct: 89  CFLARDDDRTLAKSRYSPSGDSPSAGCCFLAHDD 122


>AC006794-1|AAK68504.1|  407|Caenorhabditis elegans Hypothetical
           protein Y50D4A.3 protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 141 DDVFPVTTMFSQSRRCFPSHDDVFPVTAHVFP 236
           +D+FP + +      C+P   D F + +  FP
Sbjct: 65  EDLFPFSNLGWGPSSCWPYSYDAFKIASRYFP 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,930,568
Number of Sequences: 27780
Number of extensions: 137464
Number of successful extensions: 475
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)